BAC Information

Click to search

BAC

Clone NameMSMg01-405P16
Chromosome14 (Build37)
Map Location 113,195,781 - 113,195,923
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405P16.T7 (MSMg01no405_p16.b1)MSMg01-405P16.TJ (MSMg01no405_p16.g1)
ACCAG504282AG504283
length757780
length of high quality
(start - end)
143 (137 - 279)38 (80 - 117)
definitionCHROMAT_FILE: MSMg01no405_p16.b1 PHD_FILE: MSMg01no405_p16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:08 2005CHROMAT_FILE: MSMg01no405_p16.g1 PHD_FILE: MSMg01no405_p16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATC
CGCGGAATTCCATATTTCACCTAAAACATAATGTCTTGGGAGTTCAACGT
ACAAAAAGCCGCTGAGACTATGGAAGCTGAGGAGAGATCCCATAATGCTA
CCAGGTTCGCCAGCTCAGCAGGCATGTCTTTGGGGTTCTCATTGTTGGCA
CTGTGTGTAACACTTCATGCCAGTCTGTGGCCCAGAGCTCATATTTCCTT
CAGGTTTTATTTGCAGAATGAGCCGAATGGGTGCAATTGTGCATTGTGAT
GACTAATGGATCCCTGTAGTATTGTATTTGTCTCTGCATTTCTAAAACTT
GTACTGTGCTCAGAGTGTAGCTAACAATCAACACTTCTTTTCAGAGAACA
GCTAGTCGCAGTCTCTATTAAAATCCATTTTTCAAGCATTAGATCTCCCT
TGAAAAGTGATCAAATAGAAATGATACATTCATGTGATTTTCAATGATCA
CCGAATTTTTTAATATCGATATTATGAATTCCATATAAGGGTTCTGGTGA
GATGGCTCCACTGTTTTTAGTATCCGACTGCTCTTTCAAAGGTTCTTATT
TCCAATCCCACCCACCCCATGTTGTCTTCCCAACCCCCCGTAACTACATT
TGATTCTCTCTTCTGTTGTGTTCTGAACAACGCTCCTTCGTTATTTCCCT
CCCCACCATTTATATCTCCTTTTTTAAACTTTCCTACCCCTTTTTTTTTT
TTCACCC
NNCCCGATTGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGGCCAAGAAGTGGGAGTG
GGTGTATAGGGGAGCAGGGCAGGGAGAGGGTATAGGGTACTTTCAGGATA
CCATTTGCTATGTTGATGACTAAAATGTCTAACATAAGAGACAGACTGAA
GAAGCTAGGATTCTGAATCGCCCGAAGATTGTATGTCTGAAGGCTCTCCC
ACCAACAAAAATCGTTATCTCTTACTGCTCTCCATCCTATAGATTCCGCA
GTCTTCCCAAACATTACCACTTCTGGGGACCCTCGTGTTTTATCATAGGA
TCCTCTTGCGGCAGAGTTGCATATCCTCTCCCTGAAACACATACCTATAT
ATTGTGCCAGCGTTGTCCATCACCTGGATTGATGCCTCACCTACTACTAC
CATGAACGGCACTTGTCCGTCTCCCTTCTTTGGCCGGCCCTGCTTACTTT
TGCCCCCTCCTACTGTTTTTTTTCCCCCCTTTATTGTCCCCCCTACCTTT
TGTCCTCTGTTCCCTCTCTGCCTCCCTCCCCTTTTTTGCCTTTTTTCCCC
TCCCCCTCTTTACACCTCTTTTCTCCTTCCTTCTTTCCCCCTTTTTTTTA
TCCTTTTTTCTCCCCCTTTTTTCCCCCTTTTTTTTTTTTTTTTTTACCTT
TCTTTTCCTCTTTTACTCCCCTTTTTTTTTTTCTTTCTTCCCCTCTACTC
TTTCTCTCTTTCTCTCCCCCTCTTTTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_p16.b1 MSMg01no405_p16.b1 CHROMAT_FILE:
MSMg01no405_p16.b1 PHD_FILE: MSMg01no405_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:08 2005
         (143 letters)



>mm_chr14_113195581_113196123
          Length = 543

 Score =  261 bits (135), Expect = 1e-74
 Identities = 141/143 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcccataatgctaccaggttcgccagctcagcaggcatgtctttggggttctcattgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcccataatgctaccaggttcgccagctcagcaggcatgtctttggggttctcattgtt 260

                                                                       
Query: 61  ggcactgtgtgtaacacttcatgccagtctgtggcccagagctcatatttccttcaggtt 120
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 261 ggcactgtgtgtaacacttcatgccagtctgtggctcagagctcatatttccttcacgtt 320

                                  
Query: 121 ttatttgcagaatgagccgaatg 143
           |||||||||||||||||||||||
Sbjct: 321 ttatttgcagaatgagccgaatg 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)