BAC Information

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BAC

Clone NameMSMg01-406M19
Chromosome14 (Build37)
Map Location 97,853,082 - 97,853,427
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406M19.T7 (MSMg01no406_m19.b1)MSMg01-406M19.TJ (MSMg01no406_m19.g1)
ACCAG504909AG504910
length730730
length of high quality
(start - end)
244 (78 - 321)413 (83 - 495)
definitionCHROMAT_FILE: MSMg01no406_m19.b1 PHD_FILE: MSMg01no406_m19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:14 2005CHROMAT_FILE: MSMg01no406_m19.g1 PHD_FILE: MSMg01no406_m19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACAACATAGCAAACTCAAATGGCTGAGAAGCACTTAAA
GAAATGTTCAAAGTCCTTAGTGATCAGGGAAATGCAACTCAAAACTACCC
TGAAATTTTACTTTACACCAATCAGAATTGGTAAGATCAAAACCTCAGGT
GACAACATGTGTTGCAGAGGATGTGGAGAAGGAGGAACACTCCTCCCTTG
CTGGTGAGACTGCAAACTGGCACAACCACTCTGGAAATCAATCTGGAAGT
TCCTCAGAAAATTGGAAATATATTTATCTGAAGACCCAGCTATACCCCTC
TTGAGCATATATCCAAAAGATGCCCCACCATGCCAAAGGGGCATGTGCTC
CACTATTTTCACAGTGACCTTATCTTTGATAGCCAGAAGCTGGAAAAAAC
CCAGATGACCCACAACAGAAGAATGGATTCAGAAATCTTTCATTTAAACA
ATGAGATGCTCGTCAGCTATTAAGAACAAGGATATCATGAGTTTTGCAGG
CAATTTGATGGAACTGGAATATATCATCCTGAGTGAGGTAACTCATACCT
CAAGAATGCAATGGTCTTACAAATAAGTGAATATTAGTGAATATATATTT
TTATTTTTATATATACATATATATATTACCGCAGGATACCATCCACATAA
CTCATTAAGGTTAACCACATTAGGGCTCCC
NCCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGCATGGTAGAGGCAA
CTACATGCTACAAAATTAAATCTGGAAATTCAGCATATTAAAATAATTAG
ATTTTCCTGTTCAAATAGTAATTTTTGTTGGAGTACAGAGGTATTTAAAT
AAGGAAAAAGCTCTAAAATGGCATGCAGTGTAAACAAATTAAGGGAACAC
TGACAAACTTAAATGAAAAGCATTTGACAAAATTCAACACACTTTCAAAT
TAGTAACACTGAACAAACTAGCAAGATAAGGGAAGTACTTCAGTATAGTG
AAAGCTATATATAAAGGCCCATGGTAGATATCATACCCAGTGATGGAATA
CAAATTTTGTGGAGTAGAGGTTTTTGCAGTATGACCTAATAGTCTTTGGA
TTGACTTGGTGTCTTTATTATGCAACCCTTTTTCTTTCTGGNTTTGTTAA
TTTAGATATTCTTTCTCTGTTTTTTAATTAGTTTGGATAAGACTTTGTCT
ATCTTGTCTATTTTCTCAGAAAAAAAACTCTGTGTTTCATTGATTCTTTG
GACTATTCTCTTTTTCCTATGGTATTGATTTCAACACTGAGTTTGATTTT
TTTTTTCCTTCTATCTACTCCTCTTTGATGTGGTAGCTTCTTTCTGTTCT
AGAGATTCCAGGTATGTGGTTAAATTGCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_m19.g1 MSMg01no406_m19.g1 CHROMAT_FILE:
MSMg01no406_m19.g1 PHD_FILE: MSMg01no406_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:14 2005
         (413 letters)



>mm_chr14_97853082_97853894
          Length = 813

 Score =  669 bits (346), Expect = 0.0
 Identities = 346/346 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcatggtagaggcaactacatgctacaaaattaaatctggaaattcagcatattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaagcatggtagaggcaactacatgctacaaaattaaatctggaaattcagcatattaaa 287

                                                                       
Query: 61  ataattagattttcctgttcaaatagtaatttttgttggagtacagaggtatttaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ataattagattttcctgttcaaatagtaatttttgttggagtacagaggtatttaaataa 227

                                                                       
Query: 121 ggaaaaagctctaaaatggcatgcagtgtaaacaaattaagggaacactgacaaacttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ggaaaaagctctaaaatggcatgcagtgtaaacaaattaagggaacactgacaaacttaa 167

                                                                       
Query: 181 atgaaaagcatttgacaaaattcaacacactttcaaattagtaacactgaacaaactagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 atgaaaagcatttgacaaaattcaacacactttcaaattagtaacactgaacaaactagc 107

                                                                       
Query: 241 aagataagggaagtacttcagtatagtgaaagctatatataaaggcccatggtagatatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 aagataagggaagtacttcagtatagtgaaagctatatataaaggcccatggtagatatc 47

                                                         
Query: 301 atacccagtgatggaatacaaattttgtggagtagaggtttttgca 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  atacccagtgatggaatacaaattttgtggagtagaggtttttgca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)