BAC Information

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BAC

Clone NameMSMg01-407I04
Chromosome14 (Build37)
Map Location 119,657,400 - 119,657,850
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneLOC100043825, EG668814, LOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2
Downstream geneLOC619601, EG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407I04.T7 (MSMg01no407_i04.b1)MSMg01-407I04.TJ (MSMg01no407_i04.g1)
ACCAG505452AG505453
length751770
length of high quality
(start - end)
568 (43 - 610)454 (74 - 527)
definitionCHROMAT_FILE: MSMg01no407_i04.b1 PHD_FILE: MSMg01no407_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:10 2005CHROMAT_FILE: MSMg01no407_i04.g1 PHD_FILE: MSMg01no407_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCAAATTTTCAGCAAGTTTTATTTTTGGTGTTTCGTTTTTTAAAGAAT
GTCCTGAGTGCTCTGTCACAGATGAAATATCTGTATCAACGCACCGCCAA
TTCAAGGTGTAGTAAACAGTGCCGAGCGGGGGAGGGAAGAGCTGCAGATG
AGGAATGCTAGGAACCCTCAGCTCTGGACAGGACATGGCTGTCACACACA
GGAACTCTACGGAGCCTGTAGTCACCTGTACAAGAGGAAGCTAGTCAGAC
ATGCCAGCATGTCTCACCCAGAGCTCACAGCTATTTGTGATGGATGGCTT
GCTGAGTGACGGTCACTTTTCTTTAAGGTGGAATGACCATTAGTAAGCTG
CCTAGCATTCCCTGGCAGATGACATCACACTCACGTGTGCAGGCATAATG
TTTTTGTACACTGCAAAGTTTACCCTGGTGGTACTCAAATGCTGATAGCT
CTGCCCTTATAGCTTGTTTCAATCTGGATACAACATTGTAATTTTATATA
TTTATATTAAGAATCTCCTGTCTCAAGTTTGTGTTAACAGTTCTTACCAT
TTATTCTCTGCCTTGCCAAAAAATGCTGATCACCCAATGGCTGGGCTGAA
CAGAGAACAAGGGGGGATGCTCCCCCCCTGAGAAAGCTACAGAGTGAGAC
AGAAGAAACCCTGATTCTGATCGGGCCAGAAGGATGGAAGAACTTGTTCC
C
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAATGAAAGGTTAGAGGTATCTGAGG
TGTATCAGGTATAAGATACAGTCTGTGATCGTCCATTCAATAAGCAGACA
TGCATTGGTCTAGGTTCTTGAGATATATTGATAGCAAAACAATAATTATT
GCCCTTGTGTGGTTTAAGGGACAATATGCAAAAGAAAAGGGACATACTAA
ATAAGTGAGTTCATTATTTACTAAATGTTAAGTCAGGCAGCATAATGAAA
TAGGAAAATGGGGATAGCATAGGAGATCAGGGTGCAGAAGAATGACGACC
TAATGCTGAAAGCTCAGCAATGGTATCTCAGATCATTTGCATAGATGTGA
CCAAAACACACACACACTGGAGAGAACAACCTGAAGGAGAAAGATATATT
TTGTCTCCTAATTTCAGAGACCCACACACACACACACAGGCCATGCACTT
GAACTAAACCTCCAAGTGTGACTGTGTGGCAGAGGAGTGTGAATTTGACG
CCATGCAAGCAGATAAACCGACTCTGATGATCACCCTGACGCATCATGGA
TGTCCTCCCTTTTCCGTTTCTAACCGCTTCCCAACTCCTGCAAACTTTGT
ATCTACCCACCCTTTCTCTAAAGTCCCCCCTTTCTCTACTTCCTGTCTTT
TCTTCTCTCAGTAACGCCCACTTCCCCTGCATCCCCGGTTATTGTCTTCT
CACCTCGGCACACCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_i04.g1 MSMg01no407_i04.g1 CHROMAT_FILE:
MSMg01no407_i04.g1 PHD_FILE: MSMg01no407_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:10 2005
         (454 letters)



>mm_chr14_119657200_119658050
          Length = 851

 Score =  832 bits (430), Expect = 0.0
 Identities = 447/454 (98%), Gaps = 3/454 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatgaaaggttagaggtatctgaggtgtatcaggtataagatacagtctgtgatcgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaatgaaaggttagaggtatctgaggtgtatcaggtataagatacagtctgtgatcgtc 592

                                                                       
Query: 61  cattcaataagcagacatgcattggtctaggttcttgagatatattgatagcaaaacaat 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 591 cattcaataagcagacatgcattggtctaggttcttgagatatattaatagcaaaacaat 532

                                                                       
Query: 121 aattattgcccttgtgtggtttaagggacaatatgcaaaagaaaagggacatactaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aattattgcccttgtgtggtttaagggacaatatgcaaaagaaaagggacatactaaata 472

                                                                       
Query: 181 agtgagttcattatttactaaatgttaagtcaggcagcataatgaaataggaaaatgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agtgagttcattatttactaaatgttaagtcaggcagcataatgaaataggaaaatgggg 412

                                                                       
Query: 241 atagcataggagatcagggtgcagaagaatgacgacctaatgctgaaagctcagcaatgg 300
           |||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 411 atagcaaaggagatcagggtgcagaagaatgac---ctaatgctgaaagctcagcaatgg 355

                                                                       
Query: 301 tatctcagatcatttgcatagatgtgaccaaaacacacacacactggagagaacaacctg 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgtctcagatcatttgcatagatgtgaccaaaacacacacacactggagagaacaacctg 295

                                                                       
Query: 361 aaggagaaagatatattttgtctcctaatttcagagacccacacacacacacacaggcca 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 294 aaggagaaagatatattttgtctcctaatttcagagacccccacacacacacacaggcca 235

                                             
Query: 421 tgcacttgaactaaacctccaagtgtgactgtgt 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 tgcacttgaactaaacctccaagtgtgactgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 851
Length adjustment: 10
Effective length of query: 444
Effective length of database: 841
Effective search space:   373404
Effective search space used:   373404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)