Query= MSMg01no407_p05.b1 MSMg01no407_p05.b1 CHROMAT_FILE:
MSMg01no407_p05.b1 PHD_FILE: MSMg01no407_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:45 2005
(564 letters)
>mm_chr14_114409865_114410828
Length = 964
Score = 1075 bits (556), Expect = 0.0
Identities = 562/564 (99%)
Strand = Plus / Minus
Query: 1 attttcttttctctacagcttgacaaacacccagcattgattgccctctttctctgctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 attttcttttctctacagcttgacaaacacccagcattgattgccctctttctctgctta 705
Query: 61 ccaagaaaatgcaacaatatacccagaatattttgtacaggggagggaatcttggttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 ccaagaaaatgcaacaatatacccagaatattttgtacaggggagggaatcttggttttc 645
Query: 121 atttttcggagtctctgtccctgtcatacagaaatgttcaattctctaacaaaccttagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 atttttcggagtctctgtccctgtcatacagaaatgttcaattctctaacaaaccttagt 585
Query: 181 tcccagtctctgcaaaagtgttgccttgttactgtcttactctcatcgtctctcagtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcccagtctctgcaaaagtgttgccttgttactgtcttactctcatcgtctctcagtaaa 525
Query: 241 atatactattgaattatatgttgttttccacagaataaaggctcacttgacaggcagggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atatactattgaattatatgttgttttccacagaataaaggctcacttgacaggcagggc 465
Query: 301 atactgaaaatttagagattactggacaggagccaagggcaaaggcttgacctttcttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atactgaaaatttagagattactggacaggagccaagggcaaaggcttgacctttcttta 405
Query: 361 gaagcaacaaaacactttattgcacattgaaaatagtattatttttcacttagatttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaagcaacaaaacactttattgcacattgaaaatagtattatttttcacttagatttttt 345
Query: 421 tttggtagaaaatataaaccagaaagtatagcataaatgtatttttatgataaacatata 480
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 344 tttggtagaaaatataaaccagaaaatatagcataaatgtatttttataataaacatata 285
Query: 481 gaccaactaaaagaattttgtaaataaattaactaatcagacacaaatttttctgtcccc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gaccaactaaaagaattttgtaaataaattaactaatcagacacaaatttttctgtcccc 225
Query: 541 atatccagctgtaacagaaaatca 564
||||||||||||||||||||||||
Sbjct: 224 atatccagctgtaacagaaaatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space: 528516
Effective search space used: 528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_p05.g1 MSMg01no407_p05.g1 CHROMAT_FILE:
MSMg01no407_p05.g1 PHD_FILE: MSMg01no407_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:45 2005
(558 letters)
>mm_chr14_114216779_114217736
Length = 958
Score = 975 bits (504), Expect = 0.0
Identities = 547/562 (97%), Gaps = 4/562 (0%)
Strand = Plus / Plus
Query: 1 caggacagccaagtctatacagagaaaccctgtctcaaaaaaaattaaaaaaaaaaa--t 58
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 197 caggacagccagggctatacagagaaaccctgtctcaaaaaaaattaaaaaaaaaaaaat 256
Query: 59 ctgtgcttgcactcatcaatgaaaacacatcatcctcttaatcagagaagcttctcccta 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgtgcttgcactcatcaatgaaaacacatcatcctcttaatcagagaagcttctcccta 316
Query: 119 caaatatctgtagttaatgaagaaattcatgacttcccatgattcagataagaagcaatg 178
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 317 caaatatctgtagttaatgaagaaattcatgactttccatgattcagataagaagcaatg 376
Query: 179 actgtggtctcaaacccaaacaagacaggcataccatgctctctaaggctcaggaaacat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 actgtggtctcaaacccaaacaagacaggcataccatgctctctaaggctcaggaaacat 436
Query: 239 tgcagggaaggatagaggaagcatacaagagctagaagattggataaagagattcaaaac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgcagggaaggatagaggaagcatacaagagctagaagattggataaagagattcaaaac 496
Query: 299 -ctcccccccccc-cccccggccagggtttctctgtataaccctggctgtcctggagctc 356
| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 497 accccccccccccgcccccggacagggtttctctgtataaccctggctgtcctggaactc 556
Query: 357 actttgtagactaggctggcctcaaactcagaaatccacctgcttctacctaacactttt 416
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actttatagactaggctagcctcaaactcagaaatccacctgcttctacctaacactttt 616
Query: 417 ctttagactggatgcaggtattataaccattagctcacagaaattatactggtcttcact 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 617 ctttagactggatgcaggtattataaccattagctcacagaaattatactggtattcact 676
Query: 477 ggtcttcactggcattcactggcccatcaagacagactggcaattaacaatcaggcaagg 536
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 677 ggtcttcactggcattcactggcccatcaagacagactggcaattaacaaccaggcaagg 736
Query: 537 aaatgatagggctactgaggct 558
|||||||||||||| |||||||
Sbjct: 737 aaatgatagggctaatgaggct 758
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
