ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATTGTTAGGACTTAATCTTTGCAATGTTTTCATATCGTCTGTTTTAG
AAATAAATGTACAGGTGAAGGATTCCTCCAAGTATAGCATATGGGACAAC
ATGGTTACGTGTAATAGCAAATTCCACTAAACAGACAGAGGAGAGAAATG
TGGGTGCCCCTGTGGTCTATAAAAGCTAGCTTTGTTTACACTAAATGCTT
GTATGAAATATATACCCAGAGCTCTTGGGGAGAATCTGCATACTTGTAAT
GAAGTATACATTAAAGCCCCTTCTAATGACGGTGGTGAAGTGAGTTAGCC
TTAAAATAGTGTTCAGAGGCAACTAACAAGCCGTTGCTGCCGAGTGGGTC
ATCTCAGCTGTGCAACGCTGCATGTCATGATATGGATTAAATGTAAAACA
CGCACTTTGCTTGGTTCTCATACATCTTTGCTAATATTTGCTTCACTTGG
GTTTTGCCACGAAAAGGATTCCAGGCTGATGGAATTTTCTAGTAATCTGC
AATAATCAGAAGGTTTAACATAGTATTCTGCGGTGACTTAACATAAATTG
AGAGATCAGCCTTAAGCAAACACATTTGATGTTTCCCTTCGAGTGTTTTC
GAAGTTCCAGGATGAATGGACTAATGTAAACATGTCTTCGCCGTGTTTCC
TGTGCATGAATTCTCCCTTCGCTTGCTGCTGTACGTGATTCTGCCCTTCN

TGCATTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCTAGTCTGGTCTATAGAGTTAGTTC
TAGGACAGCCAGGGATATACAAAACAAAACAAACAAAAATACTGGTTTCT
AAAAACAAACAAAAAGGGGAATATGACGAAGTATCTTTAATACCTCTTGA
TGATATATAAATATCATACCCTGTTGAAAGCATTGTACTTTGTCGAGTTC
AGTGGCTTGCCTTTGCAGTCTAGCTACTTGGTAAACTGATATAATAATAC
TGTTAGTCTGAGGCTGACATGGACAATAAAGTGATATCTTTTCTTTCTAA
CTCATAATTTTAGTGCTAGTCTCACGATTCCGTACGTAAATGTTTCTTGC
CATTTATTCCCGAAATTCTTCATCTTTTTCTTTCTTATAATCTGCTTTTG
TGTTACTATTAGACCACAGTATATAATTTTTTCCTTTTATTAATGCCTTT
CCTCGTATCTTTGTACATCATTATATTTTGTGTCTTTCTTTTTTTCTCTA
TGTCTATGTGTTTTGTAATTTATTTTTATATCCTCCACGTTGATACCACA
TCCTCACTATATCTCATAAAATATTTATTTTTTTTTAACCTTTCATAACC
CACCCCCATCGTTTTTCTTTTTACCTGTGTTTCCGGTATTTTATCCCTTA
TACTTACCCTCCTTCTTTTGCCCAACTGTTCTTCTTTTTCCCCGCTAACT
TCTTGTCTTTATATCTCTTTTCTACCCCTTTTTTCCCTCTTTTGTGCTGT
CCTTTTATTTTCCTTATGTTTTTTTTTATTTTCTTTTCTTTACCATTTTC
CTTTTTTTATGTT

Query= MSMg01no407_p16.b1 MSMg01no407_p16.b1 CHROMAT_FILE:
MSMg01no407_p16.b1 PHD_FILE: MSMg01no407_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:48 2005
         (562 letters)



>mm_chr14_49096324_49097286
          Length = 963

 Score = 1042 bits (539), Expect = 0.0
 Identities = 554/559 (99%), Gaps = 1/559 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-cattgttaggacttaatctttgcaatgttttcatatcgtctgttttagaaata 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattgttaggacttaatctttgcaatgttttcatatcgtctgttttagaaata 264

                                                                       
Query: 64  aatgtacaggtgaaggattcctccaagtatagcatatgggacaacatggttacgtgtaat 123
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 265 aatgtacaggtgaaggattcctccaagaatagcatatgggacaacacggttacgtgtaat 324

                                                                       
Query: 124 agcaaattccactaaacagacagaggagagaaatgtgggtgcccctgtggtctataaaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcaaattccactaaacagacagaggagagaaatgtgggtgcccctgtggtctataaaag 384

                                                                       
Query: 184 ctagctttgtttacactaaatgcttgtatgaaatatatacccagagctcttggggagaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagctttgtttacactaaatgcttgtatgaaatatatacccagagctcttggggagaat 444

                                                                       
Query: 244 ctgcatacttgtaatgaagtatacattaaagccccttctaatgacggtggtgaagtgagt 303
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcatacttgtaatgacgtatacattaaagccccttctaatgacggtggtgaagtgagt 504

                                                                       
Query: 304 tagccttaaaatagtgttcagaggcaactaacaagccgttgctgccgagtgggtcatctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagccttaaaatagtgttcagaggcaactaacaagccgttgctgccgagtgggtcatctc 564

                                                                       
Query: 364 agctgtgcaacgctgcatgtcatgatatggattaaatgtaaaacacgcactttgcttggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agctgtgcaacgctgcatgtcatgatatggattaaatgtaaaacacgcactttgcttggt 624

                                                                       
Query: 424 tctcatacatctttgctaatatttgcttcacttgggttttgccacgaaaaggattccagg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 tctcatacatctttgctaatatttgcttcacttgggttttgccacgaaaaggaatccagg 684

                                                                       
Query: 484 ctgatggaattttctagtaatctgcaataatcagaaggtttaacatagtattctgcggtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctgatggaattttctagtaatctgcaataatcagaaggtttaacatagtattctgcggtg 744

                              
Query: 544 acttaacataaattgagag 562
           |||||||||||||||||||
Sbjct: 745 acttaacataaattgagag 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space:   526056
Effective search space used:   526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)