Query= MSMg01no408_b01.b1 MSMg01no408_b01.b1 CHROMAT_FILE:
MSMg01no408_b01.b1 PHD_FILE: MSMg01no408_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:55 2005
(621 letters)
>mm_chr14_57394848_57395869
Length = 1022
Score = 924 bits (478), Expect = 0.0
Identities = 484/486 (99%), Gaps = 1/486 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtgcatagcaggtaaatttataaattctaagtattgcttaagtctatgtttca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaattctgtgcatagcaggtaaatttataaattctaagtattgcttaagtctatgtttca 427
Query: 65 attggaaatacatataattgtatagtatgtgtgattataaatattgatatacagtgactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 attggaaatacatataattgtatagtatgtgtgattataaatattgatatacagtgactt 367
Query: 125 aataagtagatagtagaatggctttaaaactgatatgaattttgcctggtttgtatttct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aataagtagatagtagaatggctttaaaactgatatgaattttgcctggtttgtatttct 307
Query: 185 agagattt-ccaactcccctttttaagggagacagggtgggtgcatagccagccttcata 243
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agagatttcccaactcccctttttaagggagacagggtgggtgcatagccagccttcata 247
Query: 244 gtgttgagattagagttgtaaccagtactcctctagaagcactttttcttttaaaggttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gtgttgagattagagttgtaaccagtactcctctagaagcactttttcttttaaaggttt 187
Query: 304 atttattatatgtaagtacactgtagctgtcttcaggcaccccagaaaagggcggaagat 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atttattatatgtaagtacactgtagctgtcttcaggcaccccagaaaagggcggaagat 127
Query: 364 ctcattaaggatggttgctgggatttgaactcaggacctttggcagagcagtcagtgctc 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctcattcaggatggttgctgggatttgaactcaggacctttggcagagcagtcagtgctc 67
Query: 424 ttaacagctgaaccatctctccagcccctagaagtacttttaaaaaatgtattatcttgc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttaacagctgaaccatctctccagcccctagaagtacttttaaaaaatgtattatcttgc 7
Query: 484 caggtg 489
||||||
Sbjct: 6 caggtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_b01.g1 MSMg01no408_b01.g1 CHROMAT_FILE:
MSMg01no408_b01.g1 PHD_FILE: MSMg01no408_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:55 2005
(523 letters)
>mm_chr14_57211883_57212799
Length = 917
Score = 948 bits (490), Expect = 0.0
Identities = 513/524 (97%), Gaps = 8/524 (1%)
Strand = Plus / Plus
Query: 1 tccttctggtgaagacagccctgaagaatggagactc-cccgggacaactgcagaagatg 59
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 201 tccttctggtgaagacagccctgaagaatggagactcgcccgg-acaactgcagaagaca 259
Query: 60 atggccgagttctaccgcttgctgcctcacaggcatccagcctcagaggaagttaacctg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggccgagttctaccgcttgctgcctcacaggcatccagcctcagaggaagttaacctg 319
Query: 120 aggctgttggctcaaaaagaggacctttgtcaggtatggctctggaggaaagaattcagt 179
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 320 aggctgttggctcaaaaagaggacctttgtcaggtatgg------aggaaagaattcagt 373
Query: 180 ttcaaatgtgtggctgggtcatccctttaaaatacagtgaattggggctggcgaggtggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttcaaatgtgtggctgggtcatccctttaaaatacagtgaattggggctggcgaggtggc 433
Query: 240 ccagtggttatgggcacaggtgcagagcagctgagttcagttcccggcacccacaaggtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccagtggttatgggcacaggtgcagagcagctgagttcagttcccggcacccacaaggtg 493
Query: 300 ggtcacacctgtctgtaactccagttccacgggactcagtgtcctcccctgggatctgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggtcacacctgtctgtaactccagttccacgggactcagtgtcctcccctgggatctgtg 553
Query: 360 ggcaccagttatgcatgtggtatacatacatgcatatgtgggcaaatattcacacagata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggcaccagttatgcatgtggtatacatacatgcatatgtgggcaaatattcacacagata 613
Query: 420 aaacaaaataaatctttaaaaaataaaataaagctgagcatggtggcacagctttaaacc 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 614 aaacaaaataaatctttaaaaaataaaataaagctgagcatggtggcacggctttaaacc 673
Query: 480 cagcactcaggaagcagaaacaggcatatccctgtgaatttgag 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cagcactcaggaagcagaaacaggcatatccctgtgaatttgag 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 917
Length adjustment: 10
Effective length of query: 513
Effective length of database: 907
Effective search space: 465291
Effective search space used: 465291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
