Query= MSMg01no408_m12.b1 MSMg01no408_m12.b1 CHROMAT_FILE:
MSMg01no408_m12.b1 PHD_FILE: MSMg01no408_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:52 2005
(576 letters)
>mm_chr14_38793265_38794240
Length = 976
Score = 967 bits (500), Expect = 0.0
Identities = 523/532 (98%), Gaps = 4/532 (0%)
Strand = Plus / Minus
Query: 5 gaattctcacct--gtaccatactgaatggctgaaaagcacctgaaaaaatgctcaacat 62
|||||||||||| | | |||| ||||||||||||||||||||||||||||||||||||
Sbjct: 957 gaattctcacctgagga--ataccgaatggctgaaaagcacctgaaaaaatgctcaacat 900
Query: 63 ccttaatcatcagggaaatgcaaatcaaaacaaccctgagattccatgtcacaccagtaa 122
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 899 ccttaatcatcaaggaaatgcaaatcaaaacaaccctgagattccacgtcacaccagtaa 840
Query: 123 gaatggctaagttcaaaaattcagatgacagcaaatgctggcaaggatgtggagaaagag 182
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaatggctaagatcaaaaattcagatgacagcaaatgctggcaaggatgtggagaaagag 780
Query: 183 gatcactcctccattgttggtgggattccaagtttgtacactctggaaatcagtctggag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 gatcactcctccattgttggtgggattccaagtttgtacactctggaaatcagtctggag 720
Query: 243 gttcctcagaaaggtacttttaaatcacattaaaatcaaactgcctaacaaggcaggtca 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gttcctcagaaaggtacttttaaatcacattaaaatcaaactgcctaacaaggcaggtca 660
Query: 303 gttggtggcttcataatgttgtagagatggtccagtctttgtgagagcttgctcctcttc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gttggtggcttcataatgttgtagagatggtccagtctttgtgagagcttgctcctcttc 600
Query: 363 tagactaccagagttctaagccaggtatctgtgttgggtagctcacaggtatctgaaacc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tagactaccagagttctaagccaggtatctgtgttgggtagctcacaggtatctgaaacc 540
Query: 423 ccaattgcaaggaatctgccatgcctttgtcccatattaacattgacccacatgcatata 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ccaattgcaaggaatctgccatgcctttgtcccatattaacattgacccacatgcatata 480
Query: 483 cataaatcaaatatctttttaaactcacacacacacacacacacacacacac 534
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cataaatcaaatatctttttaaactcacacacacacacacacacacacacac 428
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 543 atatatatatatatatatatatatatatatata 575
|||||||||||||||||||||||||||||||||
Sbjct: 364 atatatatatatatatatatatatatatatata 396
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 543 atatatatatatatatatatatatatatatata 575
|||||||||||||||||||||||||||||||||
Sbjct: 366 atatatatatatatatatatatatatatatata 398
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 543 atatatatatatatatatatatatatatatata 575
|||||||||||||||||||||||||||||||||
Sbjct: 368 atatatatatatatatatatatatatatatata 400
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 543 atatatatatatatatatatatatatatatat 574
||||||||||||||||||||||||||||||||
Sbjct: 370 atatatatatatatatatatatatatatatat 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 5
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| |
