BAC Information

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BAC

Clone NameMSMg01-409B13
Chromosome14 (Build37)
Map Location 81,910,203 - 81,910,699
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409B13.T7 (MSMg01no409_b13.b1)MSMg01-409B13.TJ (MSMg01no409_b13.g1)
ACCAG506662AG506663
length796794
length of high quality
(start - end)		501 (44 - 544)456 (76 - 531)
definitionCHROMAT_FILE: MSMg01no409_b13.b1 PHD_FILE: MSMg01no409_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:20 2005CHROMAT_FILE: MSMg01no409_b13.g1 PHD_FILE: MSMg01no409_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTTTCATTGCAGCTAGTCTTCAGGACATGTTTGTTAACCAGAGAAA
TGCTACTTCACTAAAATATGAATTCACAAATATATATTCTGTTATCTATT
TTTATTAATCTGGCATAGGTCTGCATCTGTCTTTATCTTTCTATTGTCTA
TGTTGATTCATTGAAATCCTCTCTTTACCTATACATATCTTTCTGCAAGC
AAATTTGTTGTTTGTTTTGAGTCGAGTCTTCCTGCAGTAGATCCTGGGTT
CTAAGCCTCTATTTAGGTGAGATGCTCATTGAAATCTTTATCATTCTAGC
TCAGTCTCCTACAAGGTGAGATTATAGGTATGTGGCACCAGACCTGGCTG
AAATAGCTTTTAAAATAGGAATTTGTGGTGATGGGAGAACTCATTATATT
GGTACAAATTAGATCACCACAATTTTTAATATCATCTATAAAATGTCAAT
TTGCCCCAAAGGAACTGCTTATGAAAATGTTGTGTGTGTGAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGGTATAGACATATATATCTTTTCTTTC
TCTCTTCCCCTCTCTCCTCTTTTTTTCATCCCTTCTACACTTTTCTCCTT
CCTACTCTCTACATTTTTTTTTTTTTTTTTACCCCTTATCTATCTCTTTA
TTCTACTACCTATAACCTACATTTGTCCTTAATTTTGCCTCTTTTTTATG
TCATAATCTATATCACCTTTTCTCCTTCACCGCTATTTTAAACCAN

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAAATTCTTGGGCAAATGGTTGA
ATCTGGAGGATATTATCCTGAGAGGTAACCCAATGATCAGAACCCAGCAC
TCCCAACTCAACCAGTCCTGGATACCCCAACACACATGAAAAGCAAGATT
CAGATTTGCAATCATATCTTATGATGCTGATAGAGGAATTTAAGAAGGAT
ATTAATAACTCACTTAAAAAAATACAGAACACTGCTAAAGAGGTAGAGGT
CCTTAAAGAATTACAGAAAAACACAAAGAAACATGTGATGGAATTGAACA
AAACCATCAAAGACCTAAAAAGGGGAATAGACAAAATAAAGAAAACCCAA
AGTGAGACAATTCTGGAGATAGAAACCTTAGGGAAGAAATTAGGAACCAT
AGATGAGAGCATCAGTAAAAGAATACAAGAGATGGAAGAGTGCAATTCTC
ACCTGAGTTCTAGTGGTCAGAGCACTCTTATTCATCAGGGAAATGTAAAT
CAAAACTACCCTGAGATTCCACCTCAAACCAAGCAGAATGGGTAGGAACT
AAAATTCCGGTGACAGCAGATGCTGACCAACATGGGGGAAAAAAAAAAGC
CCCCCCCTCGGTTGGGGGGATTTCATCCTGTATACCCCCTTTTGAACCTC
CCTGGGTGTTTCTCGAAATTCTCGCACCTATTATTTTGTGGGATATACGT
ACATTTTTTCGGCGATTTTCACTCTTTTTTTTTCGTTGGTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_b13.b1 MSMg01no409_b13.b1 CHROMAT_FILE:
MSMg01no409_b13.b1 PHD_FILE: MSMg01no409_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:20 2005
         (501 letters)



>mm_chr14_81909999_81910899
          Length = 901

 Score =  953 bits (493), Expect = 0.0
 Identities = 496/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttcattgcagctagtcttcaggacatgtttgttaaccagagaaatgctact 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttcagtgcagctagtcttcaggacatgtttgttaaccagagaaatgctact 264

                                                                       
Query: 65  tcactaaaatatgaattcacaaatatatattctgttatctatttttattaatctggcata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcactaaaatatgaattcacaaatatatattctgttatctatttttattaatctggcata 324

                                                                       
Query: 125 ggtctgcatctgtctttatctttctattgtctatgttgattcattgaaatcctctcttta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtctgcatctgtctttatctttctattgtctatgttgattcattgaaatcctctcttta 384

                                                                       
Query: 185 cctatacatatctttctgcaagcaaatttgttgtttgttttgagtcgagtcttcctgcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctatacatatctttctgcaagcaaatttgttgtttgttttgagtcgagtcttcctgcag 444

                                                                       
Query: 245 tagatcctgggttctaagcctctatttaggtgagatgctcattgaaatctttatcattct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagatcctgggttctaagcctctatttaggtgagatgctcattgaaatctttatcattct 504

                                                                       
Query: 305 agctcagtctcctacaaggtgagattataggtatgtggcaccagacctggctgaaatagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agctcagtctcctacaaggtgagattataggtatgtggcaccagacctggctgaaatagc 564

                                                                       
Query: 365 ttttaaaataggaatttgtggtgatgggagaactcattatattggtacaaattagatcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttaaaataggaatttgtggtgatgggagaactcattatattggtacaaattagatcac 624

                                                                       
Query: 425 cacaatttttaatatcatctataaaatgtcaatttgccccaaaggaactgcttatgaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaatttttaatatcatctataaaatgtcaatttgccccaaaggaactgcttatgaaaa 684

                            
Query: 485 tgttgtgtgtgtgaaag 501
           |||||||||||||||||
Sbjct: 685 tgttgtgtgtgtgaaag 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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