BAC Information

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BAC

Clone NameMSMg01-409E08
Chromosome14 (Build37)
Map Location 82,898,696 - 82,899,140
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409E08.T7 (MSMg01no409_e08.b1)MSMg01-409E08.TJ (MSMg01no409_e08.g1)
ACCAG506795AG506796
length867778
length of high quality
(start - end)
214 (43 - 256)438 (75 - 512)
definitionCHROMAT_FILE: MSMg01no409_e08.b1 PHD_FILE: MSMg01no409_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:34 2005CHROMAT_FILE: MSMg01no409_e08.g1 PHD_FILE: MSMg01no409_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACGTGCAGCTTGACATGTAGCAGAGGGTTGCATTGTGTGCCTTATTGG
GCATCACTGGGAGGGGAGTGTCTTGGTCCTGTGGGGGCTCAGTGACCCAG
GGTAGGGGAATGCTCTGGCACTGATACAGGAGTGTGTGGGTGGGTTGAGG
AGCACCCTTGAGGTGGGTGTGAGAATAGGGGTTATGTGGAGGGAAAATGG
GAAGGATTTTTTNTTTNGTATTGTNGTTAATGTTTTTTTTTTAGTTTGGA
AATAGGAGAAGGGGAAGGTGTTTTTTTTTTTTTAGNGAGAAAATTAGAAG
AGAAATAAGGAATTTTTTTTTTGTTTCGTGGTATAAGTAGGATTGTTTTT
TTATTGGTGTTATATTTTAATAATTTTATGGTGGTTTTGTTTATTTTTGT
ATGTTTATTTTTTTTTAATTTTGGTTTTCTTATTGTTTATTTATTTTTTG
TTTTTTATGTAGTTATATTTTTTTATGTTACTTAATTTTTATTTTTTATG
TGTTATTATTTTAATATATGTTTAATTATTGAATATTAAGAGTTTTTGTA
TTTATATTTTATATTTTGTACATATTTGTAATCATTTCTCTTTTTTTGTA
TACGCTTTTTCTATTACTTCACCTATTATTTTACTTTTCTAACTCATCTA
TCTCTATGCTACTTTTGAGTGTCATCATCTTTTTATTTTATTCTTTTATC
GTTGTATTTATATTCTACTTGTCTTTTTTTCTTCTCATGCATTTTTTATT
GTAAATTTATTACATTGATCGTTGCCTTTTCCTCTTCTTTCTTTCCTTCT
TTAATCATCCCTTTCAT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTTATCACTTTCCAAAAGACACTG
GGGATGTTTCTTTGCATGTTGTTAATCTATAAATATATTTAGAGAATTAG
CATCTCTATAAATAGGGTATAAAATATCATATCCTTTTATTTTTTTATTT
TTTATTTATTCATCTGTGACTTACTTATTTTCAATAAAATTTTGATTTTC
ATCATATATGTATTTCTAAGATTTCATTAGTTAACTTCCTCGGTTACTTT
TAGTATATAAATAACGTGTTCATGGTTTTTTTTTTTTTTTGCAATATGTA
GGATTAAAAAGCAACACAGGATAGTTATACCACTATAATTTTCCTTTATA
TGATGTATGAATGTACAAATATATATGAAACATAATAATATTATTTGCTA
CAGAATTTCTGTATTACTATTTTACTTCTTCGGTATTTTGAGCACTATAT
ATGTGGGTTCTATGTGAGTTCTATATTTATACCATTCTTTCTCTTGTTCT
ACTTTCCAATCCCTCCTGAGTCCATACACATACTCCTATGTCCATGAATA
TATAAATGGATGTGAAAACAGTATATATATATATAGTACCCTATTTATAT
ACATACATCATGAATTTTATTCTTATTTTTTCGTAACAAGAACTGCTTGT
GATCTGGATTACTTTTCTATATCCTCAGAATGTGTATACCACATGTTGAG
CATAGTCTTCTTTCTTCTATTTCTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_e08.g1 MSMg01no409_e08.g1 CHROMAT_FILE:
MSMg01no409_e08.g1 PHD_FILE: MSMg01no409_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:34 2005
         (438 letters)



>mm_chr14_82898519_82899356
          Length = 838

 Score =  814 bits (421), Expect = 0.0
 Identities = 436/445 (97%), Gaps = 7/445 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggttatcactttccaaaagacactggggatgtttctttgcatgttgttaatctataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tggttatcactttccaaaagacactggggatgtttctttgcatgttgttaatctataaat 563

                                                                       
Query: 61  atatttagagaattagcatctctataaatagggtataaaatatcatatccttttattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atatttagagaattagcatctctataaatagggtataaaatatcatatccttttattttt 503

                                                                       
Query: 121 ttattttttatttattcatctgtgacttacttattttcaataaaattttgattttcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttattttttatttattcatctgtgacttacttattttcaataaaattttgattttcatca 443

                                                                       
Query: 181 tatatgtatttctaagatttcattagttaacttcctcggttacttttagtatataaataa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 tatatgtatttctaagatttcattagttaacttccttggttacttttagtatataaataa 383

                                                                       
Query: 241 cgtgttcatgg-------tttttttttttttttgcaatatgtaggattaaaaagcaacac 293
           |||||||||||       ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cgtgttcatggttttttttttttttttttttttgcaatatgtaggattaaaaagcaacac 323

                                                                       
Query: 294 aggatagttataccactataattttcctttatatgatgtatgaatgtacaaatatatatg 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aggatagttataccactataattttcctttatatgatgtatgaatgtacaaatatatatg 263

                                                                       
Query: 354 aaacataataatattatttgctacagaatttctgtattactattttacttcttcggtatt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaacataataatattatttgctacagaatttctgtattactattttacttcttcggtatt 203

                                    
Query: 414 ttgagcactatatatgtgggttcta 438
            ||||||||||||||||||||||||
Sbjct: 202 ctgagcactatatatgtgggttcta 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)