BAC Information

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BAC

Clone NameMSMg01-409J22
Chromosome14 (Build37)
Map Location 93,335,756 - 93,336,049
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409J22.T7 (MSMg01no409_j22.b1)MSMg01-409J22.TJ (MSMg01no409_j22.g1)
ACCAG507061AG507062
length767806
length of high quality
(start - end)
483 (50 - 532)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no409_j22.b1 PHD_FILE: MSMg01no409_j22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:03 2005CHROMAT_FILE: MSMg01no409_j22.g1 PHD_FILE: MSMg01no409_j22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTAAACCTGTTCCACAACTTCAGTGAAATAGCAGGATATAA
AGTTAACTCAAACAAATCAATGGCCTTTCTCTACACAAAGGAAAAACAGA
CTGTGAAGAAACAAGGGAAACAATACCCTTCAAAATAGTCACAAACAATA
TAAAATACCTTGGTGTGAATTTAACTAATGAAGTGAAAGATCTGTATGTT
AAGAACTTCAAGTCTCTGGAGAAAAAAATCAAAGAAGATTTCAGAGGATG
GAAAGATCTCCCATGCTCATGGATTGGCAGGATTAATATACTAAAAATGG
CTATCCTACCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT
CCAACTCAATTCTTCACTAAGTTAGAAAGGGCAATTTGCAAATTCATCTG
GAATAACAAAACAAAACAAAACAAAACAAAACAAAAACTAGGATAGCAAA
NACTTTTCTCAACAATAAAAGAACTTCTGGGAGAATCACCATGTGTGACC
TCAAGCTGTACTGCAGAGCAATTGTGATAAAACTGCATGGTACTGTGACA
GTGACAGACAGTAGATCAATGGATATAAATGATGACCCCCAATAAACCCC
CCCGCTTGGGCCCTGTCCTTTTGAAAAAAGCGGAACCTCCCCAAAAAAAA
AAAAAATTTTCACAAGGGGTTGGGCCCCACCTTAAATGTAAAAAAAAAAA
GGCCCTCCTTCCCTGGC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGAAAAGAGAGGAGAGATTGAAAAG
GAAAGAGAGAAAGGAGAGAGAACAAAAAGTCAGTTTGATAGGGAGTGGGA
AGAATTGGGGAAAGAAAAAATATGATTAAAGTATATTGTATATCAATTTT
GAATGAGAATATTGAAATAGAGAACAAAAGTGGAATAGAAATTTTAGGGG
TTTTATTTTATCTTATTTTTATTTTTCTGGGTTTTGTGTTTTCAGAAGAA
AAATGCAAAAGTGTTATGTATGATTTTTTTTTACTACTATCACTTACTGA
TCAAAATCCAAACAGGGATTTACCTCTCATGATATCACTGGGAAATTCTG
ATTAAACTGAAGTTCTCCAGTCATCAAACAGTGACCCCCTTTCGGTTTGC
CTCTACATTCTTATAACCGCTAGTCCTGTGGACCCCTTTCCCCTTTTCGA
ACCTAACGGCCTCTTTGACTTTCCTTTCCCTTGTCCCTCCTGTTCTCCCC
CTCTTTTCTCCCTATTTCATCTCTCCGTTCTTCTTCGCCCTCTCTCCCTT
CCTTCCCCTCTCCCCCCCTCTTTCTTTTTACTCCCCTCCCTTTTTTTCTC
TCTCTTTCTTCCCCGTCTCTCACCCCACTCTTCTTTTTCCTCCCTTCTTC
TTCTTTTTAACACTTTTCCCATTCCTCCTGCCATTCTTCCCTTTCTTTCA
CTTTTCTTTTCTTCCCCTTTCCCCTTTCCTCTCCATTTCCTTCCCTTTCT
CCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_j22.g1 MSMg01no409_j22.g1 CHROMAT_FILE:
MSMg01no409_j22.g1 PHD_FILE: MSMg01no409_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:03 2005
         (292 letters)



>mm_chr14_93335552_93336249
          Length = 698

 Score =  431 bits (223), Expect = e-125
 Identities = 274/299 (91%), Gaps = 16/299 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   aaaagagaggagagattgaaaaggaaagagagaaag-----gagagagaacaaaaagtca 59
           |||||||||||||||| |||||||||||||||||||     |||||||||||||||||||
Sbjct: 498 aaaagagaggagagatagaaaaggaaagagagaaagaacacgagagagaacaaaaagtca 439

                                                                       
Query: 60  gtttgatagggagtgggaagaattggggaaag-aaaaaatatgattaaagtatattgtat 118
           |||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 438 gtttgatagggactgggaggaattggggaaagaaaaaaatatgattaacgtatattgtat 379

                                                                       
Query: 119 atcaattttgaatgagaatattgaaatagagaacaaaagtggaatagaaattttaggggt 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atcaattttgaatgagaatattgaaatagagaacaaaagtggaatagaaattttaggggt 319

                                                                       
Query: 179 tttattttatcttatttttatttttctgggttttgtgttttcagaagaaaaatgcaaaag 238
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 318 tttattttatcttatttttatttttctgggttttgtgttttcagaagaaaaatgcagaag 259

                                                                      
Query: 239 tgttatgtatga-----tttttttttactactatcacttactgatcaaaatccaaacag 292
           |||| |||||||     ||||     |||| || |||||||||| ||||||||||||||
Sbjct: 258 tgttttgtatgaaacagtttt-----actattaccacttactgaccaaaatccaaacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 698
Length adjustment: 9
Effective length of query: 283
Effective length of database: 689
Effective search space:   194987
Effective search space used:   194987
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)