Query= MSMg01no409_k18.b1 MSMg01no409_k18.b1 CHROMAT_FILE:
MSMg01no409_k18.b1 PHD_FILE: MSMg01no409_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:07 2005
(539 letters)
>mm_chr14_86980115_86981052
Length = 938
Score = 1004 bits (519), Expect = 0.0
Identities = 531/535 (99%), Gaps = 1/535 (0%)
Strand = Plus / Minus
Query: 5 gaattcccctactttgcggcatcgagcctagggaaggagttctttacctcagcttggcat 64
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattcccctacactggggcatcgagcctagggaaggagttctttacctcagcttggcat 759
Query: 65 attattaaaaataattatttccatttgtctttgagatgtatcttggaacaagcacattct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 attattaaaaataattatttccatttgtctttgagatgtatcttggaacaagcacattct 699
Query: 125 ttttaatgctgtcatggatagcgttaattagtctttttttttttttgtatccggaacatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ttttaatgctgtcatggatagcgttaattagtctttttttttttttgtatccggaacatt 639
Query: 185 gcctcctcctctaaaaaataatgaagtggtgttcccatgtcaaagacattgtcctgtctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gcctcctcctctaaaaaataatgaagtggtgttcccatgtcaaagacattgtcctgtctg 579
Query: 245 ataagacagcaggaatttacgtgcattcttgctgtatgttctttcttgacaatctgtacg 304
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 578 ataagacagcaggaatttacgtgcattcttgctg-atgttctttcttgacaatctgtacg 520
Query: 305 gtgttaagatgacagacagttaacagtgagtcacacagtgccccatgtggtagtgctctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gtgttaagatgacagacagttaacagtgagtcacacagtgccccatgtggtagtgctctg 460
Query: 365 tggaagtatagttcagtcttttcctcaaacagtttttttttcttttgtcactttaactcc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tggaagtatagttcagtcttttcctcaaacagtttttttttcttttgtcactttaactcc 400
Query: 425 aatacctaatgaagtgtactcaaataatagtgctggatctatcaaataatcaacagcatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aatacctaatgaagtgtactcaaataatagtgctggatctatcaaataatcaacagcatt 340
Query: 485 aaagtcttccaacaaaattgaaaaaaaatgcaaattctatgatagtccaagtctt 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaagtcttccaacaaaattgaaaaaaaatgcaaattctatgatagtccaagtctt 285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space: 490912
Effective search space used: 490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_k18.g1 MSMg01no409_k18.g1 CHROMAT_FILE:
MSMg01no409_k18.g1 PHD_FILE: MSMg01no409_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:07 2005
(534 letters)
>mm_chr14_86809213_86810146
Length = 934
Score = 1033 bits (534), Expect = 0.0
Identities = 534/534 (100%)
Strand = Plus / Plus
Query: 1 ccatcccagttttatttggtactgtatgcctttctaatagttataaagattcaatttagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatcccagttttatttggtactgtatgcctttctaatagttataaagattcaatttagt 260
Query: 61 acatatgaagtgatacctcatttatttttttcaattttctttttccccatttttattttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatatgaagtgatacctcatttatttttttcaattttctttttccccatttttattttg 320
Query: 121 aaaatttttatatataatatattctgattatggattcccctctctactcctccaagttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatttttatatataatatattctgattatggattcccctctctactcctccaagttct 380
Query: 181 ttcttatcttccctcttatccaagtccaccccctttctgactctcattatgaaacaagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttatcttccctcttatccaagtccaccccctttctgactctcattatgaaacaagca 440
Query: 241 tgctcctaaggagtaataataccatatagtactgtactgtactgtactgtactgtgctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcctaaggagtaataataccatatagtactgtactgtactgtactgtactgtgctat 500
Query: 301 ataacaaaaataacacattggaattgggcaaaacaaacaaatcaaacaaaacaaaattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataacaaaaataacacattggaattgggcaaaacaaacaaatcaaacaaaacaaaattag 560
Query: 361 gcacaagaaacagagacccagtggttttacatgaaactctaaaccataatatatatgaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacaagaaacagagacccagtggttttacatgaaactctaaaccataatatatatgaaa 620
Query: 421 agaacctgtagtgcaaaaagagagaagaaaaagatataaataaaataaagataagataaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaacctgtagtgcaaaaagagagaagaaaaagatataaataaaataaagataagataaa 680
Query: 481 actgtttaaaaaggaaaagccctgacataacgttatgagacaagaaaccttcaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgtttaaaaaggaaaagccctgacataacgttatgagacaagaaaccttcaa 734
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
