BAC Information

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BAC

Clone NameMSMg01-410C01
Chromosome14 (Build37)
Map Location 50,848,132 - 50,848,599
singlet/doubletsinglet
Overlap genenone
Upstream gene1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730
Downstream geneOlfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410C01.T7 (MSMg01no410_c01.b1)MSMg01-410C01.TJ (MSMg01no410_c01.g1)
ACCAG507448AG507449
length752747
length of high quality
(start - end)		602 (53 - 654)492 (79 - 570)
definitionCHROMAT_FILE: MSMg01no410_c01.b1 PHD_FILE: MSMg01no410_c01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:46 2005CHROMAT_FILE: MSMg01no410_c01.g1 PHD_FILE: MSMg01no410_c01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTCTGACATATGCAGATTCCCCACAGATACTTAAAAGA
ACAGCCAAGTTATCTTCATATGCAAGAATTTATCAAGGCCTAGGAAATAG
GGGGGTGTGGGTATTGCATTATTCATGAAAAGGTCTTCTAGAGCAGAACC
CCCTGGTGCTAGCATTCACAAGGCTCAAAGGAGTAGCACAAATTGTGACT
AGGGTGTGAAATCCTTACCTGTCATTAGCTGACCCTAAGCAGAGCTGTTC
TATCTTAACTGTAAATATTACCTTGTTCCTGTAAGTTCCCTTGAAGTCAT
TCCTTTGTTTTGTGTTAGGTAACTTCAATGTACTTTGCCTGCTGTGACAT
CCTACCCCTTTGTTTTCTGTATTATATAAGACTGGTGTTCACGTTGTGAC
AATACACTCAGATGCAACCCATTCTCTCCTGTCATATCTGTTTGTCATTC
ACCGACTCCTTCGCCTACTTGCCACCAGAGACCCCAAAAAAAGGGATAGT
CTGCACCACAAAACAAGGTGGAAAACTGATTTGCTCATTANAGAGTACAC
TGGAAAAGGGAACCATGCTACTGACACACTTATATCTGAGAAAAATTCTT
AGCCATGTGACAATGGTGGGCTGTTGTCCTTCTTTACTTACGAGGCTAAA
CTACTTGTCTTAGTCAAAGAAGCAAAAGTGAGTGTCGGATGCGAAACTAT
AG

GGCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGACGATCACAAAATTTTATA
AACAAAATGTTTTGGGTTTGTTTTTTTTGTTTTTTTGGTTTTTTTAGTAG
AAGCCAGCGTATAACTAACATCATTAAAATGTGGGAAAATAAACTCATAT
TAATAGCTTAGATATACAAAACAGAGAAAATGATTTTTACCTTCTTGATA
CAGAAAAAGTTCTCATAATGTAAAAGAAAAGAACTGACTCCCAAAATGTG
CCCTCTGACTTTTATGTGTATTGTATGGCACATGTACACACAAGCAGTCA
TATAAATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAATGGGATATGATTAAAAATAAAGATATATTTTAAGAG
ACTGTATTGTTCACCAGAAACTCATTTCAGATATGCTTATAATCATTGAG
GTTAGTCCATGGATTCTACAATTTAGGTTCTCATTTTCTTTCCTTTGTTA
ATTGAGCCAAGGAACTGTCAATTTTGCTTATCTTCTCAAAGAACAGTTCT
TTTATCCATAGGNTCTCTATATTGCTTTACTTGTTCCTATTCCATTAACC
TCCGCTCTGAATTTTATTATACCTTGCTACTGAGTACGGTTGGATACCAT
TTCACCGAATTCACTATTGGGCTACATTACTATTTGTCCTTCTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_c01.g1 MSMg01no410_c01.g1 CHROMAT_FILE:
MSMg01no410_c01.g1 PHD_FILE: MSMg01no410_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:46 2005
         (492 letters)



>mm_chr14_50847932_50848823
          Length = 892

 Score =  855 bits (442), Expect = 0.0
 Identities = 468/492 (95%), Gaps = 24/492 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgacgatcacaaaattttataaacaaaatgttttgggtttgttttttttgtttttttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacgatcacaaaattttataaacaaaatgttttgggtttgttttttttgtttttttgg 260

                                                                       
Query: 61  tttttttagtagaagccagcgtataactaacatcattaaaatgtgggaaaataaactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttttagtagaagccagcgtataactaacatcattaaaatgtgggaaaataaactcat 320

                                                                       
Query: 121 attaatagcttagatatacaaaacagagaaaatgatttttaccttcttgatacagaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaatagcttagatatacaaaacagagaaaatgatttttaccttcttgatacagaaaaa 380

                                                                       
Query: 181 gttctcataatgtaaaagaaaagaactgactcccaaaatgtgccctctgacttttatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctcataatgtaaaagaaaagaactgactcccaaaatgtgccctctgacttttatgtg 440

                                                                       
Query: 241 tattgtatggcacatgtacacacaagcagtcatataaataataaataaataaataaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattgtatggcacatgtacacacaagcagtcatataaataataaataaataaataaataa 500

                                                                       
Query: 301 ataaataaataaataaataaataaataaataaataatgggatatgattaaaaataaagat 360
           ||||||||||||                        ||||||||||||||||||||||||
Sbjct: 501 ataaataaataa------------------------tgggatatgattaaaaataaagat 536

                                                                       
Query: 361 atattttaagagactgtattgttcaccagaaactcatttcagatatgcttataatcattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atattttaagagactgtattgttcaccagaaactcatttcagatatgcttataatcattg 596

                                                                       
Query: 421 aggttagtccatggattctacaatttaggttctcattttctttcctttgttaattgagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aggttagtccatggattctacaatttaggttctcattttctttcctttgttaattgagcc 656

                       
Query: 481 aaggaactgtca 492
           ||||||||||||
Sbjct: 657 aaggaactgtca 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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