Query= MSMg01no411_d14.b1 MSMg01no411_d14.b1 CHROMAT_FILE:
MSMg01no411_d14.b1 PHD_FILE: MSMg01no411_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:11 2005
(508 letters)
>mm_chr14_107277588_107278495
Length = 908
Score = 781 bits (404), Expect = 0.0
Identities = 443/456 (97%)
Strand = Plus / Plus
Query: 1 tattgagtaaaggagagatgagaggtaaattgccgatggtttgtgaataagcatacattg 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tattgagtaaaggagagatgagaggtaaattgccgatggtttgcaaataagcatacattg 260
Query: 61 gatttatgtaaaataaaaaccaaaagagttttagtttctttgtaaaatttttcattatac 120
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gatttatgtaacataaaaaccaaaagagttttaatttctttgtaaaatttttcattatac 320
Query: 121 tatgtggagaaaataataaatgacacaaatcaaagtctttagcacaattgcctattttaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tatgtggagaaaataataaatgacacaaatcaaagtcttaagcacaattgcctattttaa 380
Query: 181 aactcatttgaattatttatctttacttgatagctttccaaacacataaaataaatcatt 240
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactcatttgatttatttatcattacttgatagctttccaaacacataaaataaatcatt 440
Query: 241 gtttattgtataaaacatcattgaaaatatatataattaactatatattttttaattatc 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gtttattgtataaaacatcattgaaaatatatataattaactacatattttttaattatc 500
Query: 301 ttaaatttttcttaaaatttccttttcctttttgtttttcatatacaaaactttcatatt 360
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 501 ttaaatttttcttaaaatttccttttcctctttgtttttcatatacaaaactttcatact 560
Query: 361 tgattctaattcactatatagatgtttttatagaatttcctttcattcatgcctcaagat 420
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 561 tgattctaattcactatatagatgtttttatagaatttcctctcattcatggctcaagat 620
Query: 421 tttcatcttcttcatacacagatgtttcttgaaaga 456
|||| |||||||||||||||||||||||||||||||
Sbjct: 621 tttcttcttcttcatacacagatgtttcttgaaaga 656
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no411_d14.g1 MSMg01no411_d14.g1 CHROMAT_FILE:
MSMg01no411_d14.g1 PHD_FILE: MSMg01no411_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:11 2005
(565 letters)
>mm_chr14_107445576_107446540
Length = 965
Score = 975 bits (504), Expect = 0.0
Identities = 551/568 (97%), Gaps = 6/568 (1%)
Strand = Plus / Minus
Query: 1 ttgactacgagccaatattcagtgctttatgatgcagtatgaaagtttggatgaagcaag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttgactatgagccaatattcagtgctttatgatgcagtatgaaagtttggatgaagcaag 706
Query: 61 tctccctgatgcctgaaattaggagataacacatttgttgaatatttggccttctggctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 705 tctccctgatgcctgaaattaggagataacacatttgttgaatatttggccttctggcat 646
Query: 121 agaggagaggttgatacagagtaaatgaatgaaaataaaaacaaaccttcctcagtggat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agaggagatgttgatacagagtaaatgaatgaaaataaaaacaaaccttcctcagtggat 586
Query: 181 tttttcaatcattgttttacctacttttgataattataacgaacacaagggaattttcta 240
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 585 tttttcaatcattgttttacctacttttgataattataacaaatacaagggaattttct- 527
Query: 241 tgttaacacctgtgcatgttttctgtctccattgagaatgaggaggataaaaactttttg 300
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 -gttaacagctgtgcatgttttctgtctccattgagaatgaggaggataaaaactttttg 468
Query: 301 aatgctctcataggcaaactatgacctcagcttgagacagcttctgatcaaaacagtctc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 467 aatgctctcataggcaaactatgacctcagcttgagacagcttatgatcaaaacagtctc 408
Query: 361 ttgtatgttgctgtttacatatgacctattttcacgcttttcact--gactgtgtatatg 418
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 407 ttgtatgttgctgtttacatatgacctattttcacgcttttcactaagactgtgtatatg 348
Query: 419 caactg-ttcgacatctatataaaagagtctgtttgctccagagtaaagcttattaccta 477
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 347 caa-tggttcgacatctatataaaagagtctgtttgctccagagtaaagctaattaccta 289
Query: 478 ataataatttctaaatcactaagacactgacagtaatgaagcttcttggaaattatttgt 537
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 288 ataataatttctaaattactaagacactgaaagtaatgaagcttcttggaaattatttgt 229
Query: 538 aatcaagaaatcatcaccaggaacacca 565
||||| ||||||||||||||||||||||
Sbjct: 228 aatcaggaaatcatcaccaggaacacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
