BAC Information

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BAC

Clone NameMSMg01-411G05
Chromosome14 (Build37)
Map Location 93,127,471 - 93,127,712
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411G05.T7 (MSMg01no411_g05.b1)MSMg01-411G05.TJ (MSMg01no411_g05.g1)
ACCAG508411AG508412
length744751
length of high quality
(start - end)
244 (80 - 323)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no411_g05.b1 PHD_FILE: MSMg01no411_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:25 2005CHROMAT_FILE: MSMg01no411_g05.g1 PHD_FILE: MSMg01no411_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAGAGAAT
CCGCGGAATTCAATTCCATTCCTATCTCTAGAGTAATTGTTCTGAATGGT
GACTACAATACTTTCTCTTAATCTTCTTCCTTTTTCACATAGCATTGATA
CTATTTAATCCATCTGTGCTATTGTCTTCTTTGAATCTTAATGCGAATGC
AAGTCTTAATTCATTGTTGAAACTATAACGGTCACTGAAACTACTGTTTT
TTTTACCATGCATCTTACATGATAATTGTAATTTTTCACTACTACTTTAT
GTCAAAGTATTCCTATACTCTATTTTTTTTATATTGGTCATCATTTCATG
AATATTTTACCTTACTTCCTATGCCTCTCCATTTGTACAGATTTGAAGTG
CAAAATTCTAGTTCTTTAGAAAGCTAGTTATATCACACGATGTTTTCCTG
GGTTATACAGGTGAAGGATGCCTTGCTAAAGCAAACACATGACACGTTGT
TCTAATGAACCAGATACCGGTGAAAAGATGTTTTGACATAGTACACATGT
GAAAGGATTCTTGATGAACCATCATAACCACTACCTCCCAGATAGTGCGT
TTGAATCACTGAATTTATTCTTGGCCTGTTTGCCCTCATCATTATTTTCT
TATGATATTCCTTCATTGAATTTCTCCCCACTATCCGTTTCATCGTCACT
TACGATTAACTCCCACTTTTGTTATATACTTTTCCCATGCACTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGCTGAGGAATACTGAATGGCTGAGA
AGCACCTGAAAAAAATGTTCAGCATCCTTAATCATCAGAGAAATGCAAAT
CAAAAAATTGAGACTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGTGAGGATTTGGAGAAAGAAGAACACTC
CTCCATTGTTGGTGGGCTTTCAAGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTTTTCCGATATTTGGACATAGTACTACCGGAGGATTCCGCAA
TACCTCTCCTGGTCATATATTCTGAAGATGCCTCAACCGTTAATAAGGAC
ATTATGCTCCACTATGTTCATAGCAGCCTTATTTATCATATTCATACATC
GTATCGAACCCATATGCCCCCCATTCGATGAATGTATACAGATTATGTGT
TTTCTTTACCCTTTGGAGTATTATTCCTTTCTTTTTTATTCTGATTTTAC
GACTCTCCTAGTCCTTTGTCTGTTTTCGGCCTTTTCCCCTTTTTTTCGCG
TTCTTTCCTTTTTTTCCCATCTTTCCCCCTTTTCCGTTCCCTTTATTTTC
GCATTTCTATTCTTTATTCCTTTTCCTCCCTCCTTTATGCCCATTTTCGT
TTGCTTCCTTTCTTTCTCCCCCTCGTACGCATTTCTTCTTCTTCCTGTTT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_g05.b1 MSMg01no411_g05.b1 CHROMAT_FILE:
MSMg01no411_g05.b1 PHD_FILE: MSMg01no411_g05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:25 2005
         (244 letters)



>mm_chr14_93127271_93127913
          Length = 643

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%), Gaps = 1/243 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagtaattgttctgaatggtgactacaatactttctcttaatcttcttcctttttcaca 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagtaattattctgaatggtgactacaatactttctcttaatcttcttcctttttcaca 260

                                                                       
Query: 61  tagcattgatactatttaatccatctgtgctattgtcttctttgaatcttaatgcgaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tagcattgatactatttaatccatctgtgctattgtcttctttgaatcttaatgcaaatg 320

                                                                       
Query: 121 caagtcttaattcattgttgaaactataacggtcactgaaactactgttttttttaccat 180
           ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct: 321 caagtcttaattcattgttgaaactataatggtcactgaaactactggtttttt-accat 379

                                                                       
Query: 181 gcatcttacatgataattgtaatttttcactactactttatgtcaaagtattcctatact 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 gcatcttacatgataattgtaatttttctctactactttatgtcaaagtattcctatact 439

              
Query: 241 cta 243
           |||
Sbjct: 440 cta 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)