Query= MSMg01no412_f02.b1 MSMg01no412_f02.b1 CHROMAT_FILE:
MSMg01no412_f02.b1 PHD_FILE: MSMg01no412_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
(489 letters)
>mm_chr14_60387036_60387924
Length = 889
Score = 899 bits (465), Expect = 0.0
Identities = 479/485 (98%), Gaps = 3/485 (0%)
Strand = Plus / Minus
Query: 5 gaattccaggattaccaggactacacagggaaaccctgtctcaaaaaaaaaaaaaattaa 64
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 740 gaattccaggacaaccaggactacacagggaaaccctgtctc---aaaaaaaaaaattaa 684
Query: 65 gaatgctcccagtgattttcataaatgattctttgtagttggctacacagtggggttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaatgctcccagtgattttcataaatgattctttgtagttggctacacagtggggttttg 624
Query: 125 gcaaatgaacataattctttgaagctttaagaattaaagtagtatctaataatggcaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gcaaatgaacataattctttgaagctttaagaattaaagtagtatctaataatggcaaat 564
Query: 185 attacccttcccccaccccaacccagagccagagacagatgcagcagcaagcagtctgtc 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 attacccttctcccaccccaacccagagccagagacagatgcagcagcaagcagtctgtc 504
Query: 245 tattcatagcatcttcagtcattgaaaagatacattgtttctactgagattttcccccac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tattcatagcatcttcagtcattgaaaagatacattgtttctactgagattttcccccac 444
Query: 305 caatgtgattaagtatttctttgtctagtctattccatttggagtttttctcacggggtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caatgtgattaagtatttctttgtctagtctattccatttggagtttttctcacggggtt 384
Query: 365 gaaggcaggtcttccctcgcgggcacagggaaggaagggtggagaatgaaagctcttttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaggcaggtcttccctcgcgggcacagggaaggaagggtggagaatgaaagctcttttc 324
Query: 425 cactgtcagaggttcatcttccctgtggcaccttgtgatgtgacacggaaagcccagcag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cactgtcagaggttcatcttccctgtggcaccttgtgatgtgacacggaaagcccagcag 264
Query: 485 ccacc 489
|||||
Sbjct: 263 ccacc 259
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_f02.g1 MSMg01no412_f02.g1 CHROMAT_FILE:
MSMg01no412_f02.g1 PHD_FILE: MSMg01no412_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
(117 letters)
>mm_chr14_60168571_60169087
Length = 517
Score = 226 bits (117), Expect = 3e-64
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 accactggataaagatctgaagcatttgagaccttggaagtctagatttggtccgactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accactggataaagatctgaagcatttgagaccttggaagtctagatttggtccgactgt 260
Query: 61 gtcctctgatccaggagtatggtttggttttgaagttaggagagtgtgtgttgtggt 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctctgatccaggagtatggtttggttttgaagttaggagagtgtgtgttgtggt 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space: 55481
Effective search space used: 55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
