BAC Information

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BAC

Clone NameMSMg01-412I14
Chromosome14 (Build37)
Map Location 35,634,658 - 35,635,005
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412I14.T7 (MSMg01no412_i14.b1)MSMg01-412I14.TJ (MSMg01no412_i14.g1)
ACCAG509286AG509287
length732765
length of high quality
(start - end)
423 (70 - 492)348 (83 - 430)
definitionCHROMAT_FILE: MSMg01no412_i14.b1 PHD_FILE: MSMg01no412_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:56 2005CHROMAT_FILE: MSMg01no412_i14.g1 PHD_FILE: MSMg01no412_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGGTTTCCTCTGTACCCCATTTTTAATAGGGTTATTTGGT
TTTCTGGAGTACAACTTCTTGAGTTGTTTATATGAATTGGATATTAGCCC
CCTATCAGATTTAGGATTGGTGAAGATCTTTTCCCAATCTGTTGGTTGCC
TTTTGGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTGTCCATTCTTGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATCTTTCCCCTGTGCCCATATCTTTGAGGCTCTTCCCCA
CTTTCTCTTCTATTAGTTTTAGTGTCTCTGGTTTTATGTGGAGTTCTTTA
ATCCACTTAGACTTAAGCTTTAATTAGCTATTAGGTCCTTAGGAGTGATG
GGTAGACATTTCTCAGTCTCCCCCAGGGAGAAAATTCTAACAACACATAG
GGTTAGTGAACAATGTCACATATATGCATAGCACCTCAATGGAAACCAGC
TGCTGAGACCATCGGTGGAATTGGCCATTTATAATTCACACACCTCCTGA
CCTTTCCCCTTATGAAGTAGCCAATGTGCCCCTGTCCTATGATGGTTCTC
ACAAATACCCTGATTACCGTACCTTTCCATACCCTCTGTCCCTTGGCAAT
TTCTTCTGCCCTCTTCTTAACCTTCCCGGACT
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGCCGAGTCCTTTTCC
TACCCAGCTCTCGGCTCCAGGGCAATTAGAAGGCCAAGCAATAGGACCTT
GGCAATGACCCTCGGCGCCTGGTAAAGGGGCTGTGGGGGGTCAGTGAGGA
CCCCAGAGCAGCAGTCCAACTGATCTCCGCTATAGGGGCAGGGTCAGGGA
AGCTGTGTGCCTAGTGAAAGCGTCAGGTCTGCCAGAGCTCCGGATGAGAT
GTTCCTGCTTCTAGAAGGGCCATTCAAGAGTGGTTTCTTCTGGGACTCTC
CAGTCTTGCTAGATCAGAATGTCTAGGGGTTTAGGATATAGCCCCACCCC
TTTCATACATACAGGAAGAGGAAGTGAGAAACGAAGAGCAGAGGCACCAG
GCCTGGTAGCATCTTGACCATACAAGATTCTGGGTATCAATGCCTTCTGC
TTAAAAAAAAAAGTTCTTTGGTGTACGAGAGCCGGCCGGGCGTGGACCAT
CTTTTCATTTCTGGCTTCGCCAGGGAATGTTAAGGAAAAAAAAAAAGTCT
CCCCCCCCTCTGGAATTGGGATAGGCGAAACTTTTCTTTTTCGAAAATTT
TTTCCCGGCTTCTTGCGACGCGCCCTTCTTTTTCACCACTTCATTCCCTC
TTCACCCTTGATTCCATCCCCATCCTCTTCTCCTTGTCTTATCCTTTTTA
TTTCCCCCTCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_i14.g1 MSMg01no412_i14.g1 CHROMAT_FILE:
MSMg01no412_i14.g1 PHD_FILE: MSMg01no412_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:56 2005
         (348 letters)



>mm_chr14_35634458_35635205
          Length = 748

 Score =  665 bits (344), Expect = 0.0
 Identities = 347/348 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagccgagtccttttcctacccagctctcggctccagggcaattagaaggccaagcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagccgagtccttttcctacccagctctcggctccagggcaattagaaggccaagcaat 260

                                                                       
Query: 61  aggaccttggcaatgaccctcggcgcctggtaaaggggctgtggggggtcagtgaggacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaccttggcaatgaccctcggcgcctggtaaaggggctgtggggggtcagtgaggacc 320

                                                                       
Query: 121 ccagagcagcagtccaactgatctccgctataggggcagggtcagggaagctgtgtgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagagcagcagtccaactgatctccgctataggggcagggtcagggaagctgtgtgcct 380

                                                                       
Query: 181 agtgaaagcgtcaggtctgccagagctccggatgagatgttcctgcttctagaagggcca 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 agtgaaagcgtcaggtctgccagagctccggatgagctgttcctgcttctagaagggcca 440

                                                                       
Query: 241 ttcaagagtggtttcttctgggactctccagtcttgctagatcagaatgtctaggggttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcaagagtggtttcttctgggactctccagtcttgctagatcagaatgtctaggggttt 500

                                                           
Query: 301 aggatatagccccacccctttcatacatacaggaagaggaagtgagaa 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggatatagccccacccctttcatacatacaggaagaggaagtgagaa 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)