Query= MSMg01no413_b07.b1 MSMg01no413_b07.b1 CHROMAT_FILE:
MSMg01no413_b07.b1 PHD_FILE: MSMg01no413_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:39 2005
(603 letters)
>mm_chr14_14513726_14514728
Length = 1003
Score = 1143 bits (591), Expect = 0.0
Identities = 597/599 (99%)
Strand = Plus / Minus
Query: 5 gaattcagtaacttgcttcaaagtaagcagcttttcctgtggtgctaagattgtggcctt 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gaattcagtagcttgcttcaaagtaagcagcttttcctgtggtgctaagattgtggcctt 744
Query: 65 atctgcctgattccagaactatactcttaactactaagttattttgcctttcttcagaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atctgcctgattccagaactatactcttaactactaagttattttgcctttcttcagaca 684
Query: 125 cagaattttctgttttcagattttaaatatataatctcttcactataggatgtataactt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagaattttctgttttcagattttaaatatataatctcttcactataggatgtataactt 624
Query: 185 atgtgctccctggactatgtgattattcagagccacagaataaactgtgctagaagaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 atgtgctccctggactatgtgattattcagagccacagaataaactgtgctagaagaatg 564
Query: 245 tacattgctttgtgtgattattcaacaattgatatgattgtcaattatacccaggcacat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tacattgctttgtgtgattattcaacaattgatatgattgtcaattatacccaggcacat 504
Query: 305 agatgtcatacatagactgcaggaaaacatctgatcagcaaataaatggggaaccctttc 364
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 503 agatgtcatacatagactgcaggaaaacatctgaccagcaaataaatggggaaccctttc 444
Query: 365 agtttcaaacatttcaaacaacagctggaaactttgacattaagcacagaaatgtcatct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtttcaaacatttcaaacaacagctggaaactttgacattaagcacagaaatgtcatct 384
Query: 425 gagtcactctggtgcatagctgcgtgtgcattcagtttaagcacaaatgctcatctgtgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gagtcactctggtgcatagctgcgtgtgcattcagtttaagcacaaatgctcatctgtgc 324
Query: 485 actggctgtaaaggttccaggaatgcttgagacatttttggaatgatggtgcattctgtt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 actggctgtaaaggttccaggaatgcttgagacatttttggaatgatggtgcattctgtt 264
Query: 545 acagtctaaacccatccttgtctgtctaggttggctgtccacaggccatatctttagcc 603
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acagtctaaacccatccttgtctgtctaggttggctgtccacaggccatatctttagcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_b07.g1 MSMg01no413_b07.g1 CHROMAT_FILE:
MSMg01no413_b07.g1 PHD_FILE: MSMg01no413_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:39 2005
(503 letters)
>mm_chr14_14371044_14371946
Length = 903
Score = 830 bits (429), Expect = 0.0
Identities = 481/503 (95%), Gaps = 8/503 (1%)
Strand = Plus / Plus
Query: 1 attgtcaccttagtacacaatattttgtaattggaaatagcacatcttcccaatgtattt 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtcacctcagtacacaatattttgtaattggaaatagcacatcttcccaatgtattt 260
Query: 61 aagtttgccagcatagaaggggcatttcacacaaagccactgtgagtataactatgagca 120
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcttgccagtatagaaggggcctttcacacaaagccactgtgagtataactatgagca 320
Query: 121 gtaatatgcttcccaaacgctgtctgtcagaccaattgtccaccccagattaattcagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatatgcttcccaaacgctgtctgtcagaccaattgtccaccccagattaattcagag 380
Query: 181 ccttttctctgcaaaactgaagaagaaagtctgtttcatctgtgcataaaagaggcgcca 240
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 381 ccttttctctgcaaaactgaagaagaaagtccgtttcatgtgtgcataaaagaggcgcca 440
Query: 241 gtgtagaaaacaaaccagtgcccattttgaaggcagttgcaaacaagtctgtggcttttg 300
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 441 gtgtagaaaacaaaccagtgcccattttcaaggcagttgcaaacaagtctgtggctgctg 500
Query: 301 tagttcctctcctgttctggagatgaagcccaaggagatagctggcgttggaagtttcat 360
|| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 taattcctctcccgttctggagatgaagcccaaggagatagctggagttggaagtttcat 560
Query: 361 gatttagacaatgcttcattagtttctgcaaccacagtcatatagttaagattctgcata 420
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gattcagagaatgcttcattagtttctgcaaccacagtcatatagttaagattctgcata 620
Query: 421 tttacttaaatgtgatatgtctgtacaagtgggaaagggtaactttaatgtttctccacc 480
||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 621 tttacttaaatgtgatatgtctgtacaagtgggaaagggtaacttta--------ccacc 672
Query: 481 cacatgactattaaattctgtat 503
|||||||||||||||||||||||
Sbjct: 673 cacatgactattaaattctgtat 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space: 440249
Effective search space used: 440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
