BAC Information

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BAC

Clone NameMSMg01-413C05
Chromosome14 (Build37)
Map Location 113,250,686 - 113,251,046
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043501, EG223186
Downstream geneLOC100043509, Tpm3-rs7, LOC100043510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413C05.T7 (MSMg01no413_c05.b1)MSMg01-413C05.TJ (MSMg01no413_c05.g1)
ACCAG509742AG509743
length748749
length of high quality
(start - end)
278 (38 - 315)489 (69 - 557)
definitionCHROMAT_FILE: MSMg01no413_c05.b1 PHD_FILE: MSMg01no413_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:43 2005CHROMAT_FILE: MSMg01no413_c05.g1 PHD_FILE: MSMg01no413_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCC
ACCCGTTCCACCATCCCATAATCAACCACCAAATCCAGACACTATTGCAT
ATGCCAGAAAGATTATAGCTGTCTCGTATGAGGCTATGCCAGCGCCTGAC
AAATACAGAAGTGGATGCTCACAGTCATCTATAAGATGGAACACAGGGCC
CCCAATGGAAAAGCCAGAGAAAGCACCCATGGAGCTGAAGAGGTCTACAA
CGCTATAAGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCAT
ATCTCTAGCTGCATATGTTTTTGAAGATGGCCTAGTTGGCTATCACTGGG
AAGATAGGCCCCTTGGAATTGCAAACTTTATATGCCCCAGTAGAGGGGAA
TGCCAGGGCCAAGAATGTGGAGTGGATGGGTAGGGGAGTATGGCAGAGGT
AGGGTACAGGGAACTTTCGGCATATCTTTTGAAATGCATATTAAGAATAA
TATCTAATCCTACCCCGCTATTGATTCTTCTCGACCGTTATGCGCTATCT
TATAACCTCTACGTTTTATTTTGCCTCCCCTGATTTTCCCAACCATTTTG
TCTTTTAGCCGTTCTTTTGCCTACTTCCTTTCGTTTCTACCAATTCCTTC
CTTCGTTTTATCTTCGTTCTTTGCATCTTCTCGCTTCCCTTTTCATTATA
TCCACATCTTTCTTCATAGCCCTTTCTTTTTCTCTTTTCTCCCCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACAGCTAGTGACTACCAGGTAAATGTAGAGAA
ATCATATTCTCTACAGTCAGTAAAGATAGAGTAATTTGTGCAAAATTTTA
AGAAATGCTCAGTATTTTGAAATTTAGAGAAAATTTGTAAATAGATGTAG
CATCATGATAAATTAATAGAAAACCCATATGTCCTAATGACAGTGTCCAT
TGCCTTACAACAATTTTTCATTTTCACGGGGTGTCATTTATTAATTGTAG
ATCTTATTGCATGCAGTAGTGGTGTTCAGATCAGGTAGTCTTTTGTCCTG
TGCCAGTGCATTAAAGGCTATTACCCACTGCTTTTAACAATTTCTTCTAT
CAGTGTATCTGGTTTTATGCTAAGGTCTTTTCTTTGTTACACTTAGACTT
AAATTTTGTATGGGGTAATAGATATGGATCTATTGGCATTCTTTTATATG
CAGAAATTCTATTAGACCAGCACCACTTGGTGAAGATGTTTTCATTATTT
TGAATGTATAATTCTGCAATCTTTATCAAAAATCAGGTATTCATAACTAT
GTAGATTTCTGTCTGTGGCCTTTCACTTCAACTATTGAACAAACCGGTTT
AACCCCAATAACCCTGTGGTCCTTTTTAATATGGGTCCTTTATTGGCGCT
TTGTACCCTGTAAAGGGTATACCCTCGTGTGGGCTCTCTTTCGTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_c05.g1 MSMg01no413_c05.g1 CHROMAT_FILE:
MSMg01no413_c05.g1 PHD_FILE: MSMg01no413_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:43 2005
         (489 letters)



>mm_chr14_113250686_113251574
          Length = 889

 Score =  683 bits (353), Expect = 0.0
 Identities = 359/361 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagctagtgactaccaggtaaatgtagagaaatcatattctctacagtcagtaaagata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acagctagtgactaccaggtaaatgtagagaaatcatattctctacagtcagtaaagata 302

                                                                       
Query: 61  gagtaatttgtgcaaaattttaagaaatgctcagtattttgaaatttagagaaaatttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagtaatttgtgcaaaattttaagaaatgctcagtattttgaaatttagagaaaatttgt 242

                                                                       
Query: 121 aaatagatgtagcatcatgataaattaatagaaaacccatatgtcctaatgacagtgtcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 241 aaatagatgtagcatcatgataaattaatagaaaacccatatgtcctattgacagtgtcc 182

                                                                       
Query: 181 attgccttacaacaatttttcattttcacggggtgtcatttattaattgtagatcttatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attgccttacaacaatttttcattttcacggggtgtcatttattaattgtagatcttatt 122

                                                                       
Query: 241 gcatgcagtagtggtgttcagatcaggtagtcttttgtcctgtgccagtgcattaaaggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121 gcatgcagtagtggtgttcagatcaggtagtcttttgtcctgtgccagtgcgttaaaggc 62

                                                                       
Query: 301 tattacccactgcttttaacaatttcttctatcagtgtatctggttttatgctaaggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tattacccactgcttttaacaatttcttctatcagtgtatctggttttatgctaaggtct 2

            
Query: 361 t 361
           |
Sbjct: 1   t 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)