Query= MSMg01no413_o12.b1 MSMg01no413_o12.b1 CHROMAT_FILE:
MSMg01no413_o12.b1 PHD_FILE: MSMg01no413_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:44 2005
(247 letters)
>mm_chr14_67850058_67850705
Length = 648
Score = 327 bits (169), Expect = 4e-94
Identities = 233/264 (88%), Gaps = 17/264 (6%)
Strand = Plus / Minus
Query: 1 tgttgtactgcagctt-anacaatatgttcaggccgaaattggttttaaggcccggttgg 59
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgttgtactgcagcttaagacaatatgttcaggccgaaattggttttaaggcccggttgg 306
Query: 60 cccagaatttaccagccctgacatcctgtgcgctggggcccttctcaaagtcggaggttt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cccagaatttaccagccctgacatcctgtgcgctggggcccttctcaaagtcggaggttt 246
Query: 120 gaggtatgccctccaggcgtcataacacacccctcaccccacaac---ccccccc----- 171
||||||||||||||||||||||||||||| ||||||||||||||| | | | |
Sbjct: 245 gaggtatgccctccaggcgtcataacacatccctcaccccacaactaactctctctctct 186
Query: 172 --------ctctctctcacacacacacacactctcgcgtgtctgcctctatgcatctcaa 223
||||||||| | | | | | | |||||| ||||||||||||||||||| |||
Sbjct: 185 ctctctctctctctctctctctctctctctctctcgtgtgtctgcctctatgcatcccaa 126
Query: 224 agcacagacctggacccttcctga 247
||||||||||||||||||||||||
Sbjct: 125 agcacagacctggacccttcctga 102
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 648
Length adjustment: 9
Effective length of query: 238
Effective length of database: 639
Effective search space: 152082
Effective search space used: 152082
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no413_o12.g1 MSMg01no413_o12.g1 CHROMAT_FILE:
MSMg01no413_o12.g1 PHD_FILE: MSMg01no413_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:45 2005
(474 letters)
>mm_chr14_67683165_67684037
Length = 873
Score = 861 bits (445), Expect = 0.0
Identities = 467/475 (98%), Gaps = 3/475 (0%)
Strand = Plus / Plus
Query: 1 atattttaaaagcaatggatagtaaaagatgaagtggtgggagtataaaat-ggacagct 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 atattttaaaagcaatggatagtaaaagatgaagtggtgggagtataaaatgggacagct 260
Query: 60 gtggcctagccctctgctgatgtgactgatgggtagtgcaagctcagcacaccactccac 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtggcctagccctctgctgatgtgactgatgggcagtgcaagctcagcacaccactccac 320
Query: 120 acacttgccttaaagatcggaagctctgctatcagattttaagctgggaaaaaaaaaaag 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 acacttgccttaaagatcggaagctctgctatcagattttaagctggggaaaaaaaaa-- 378
Query: 180 actcagacagataaacacacaaatggacagtccataactagggaaaatgaagcaagcata 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 379 actcagacagataaacacacaaatggacagtccataactagggaaaatgaagtaagcata 438
Query: 240 caacagtgtacttgaacacggtgctaaacaatgcaaacaggatcccaaatcaaacacatg 299
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caacagtgaacatgaacacggtgctaaacaatgcaaacaggatcccaaatcaaacacatg 498
Query: 300 tgctgcaacattgtggcactaaagggcaaagagatggggctgatgatggaaagagcttag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgctgcaacattgtggcactaaagggcaaagagatggggctgatgatggaaagagcttag 558
Query: 360 tcttcatctactggagggaaaactgagttgcaagtgtgtaaaactgatactgaggtatca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcttcatctactggagggaaaactgagttgcaagtgtgtaaaactgatactgaggtatca 618
Query: 420 ttttactcctccccaagtgccagtgagcacaaggaacaggacaagagcttaacat 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttttactcctccccaagtgccagtgagcacaaggaacaggacaagagcttaacat 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
