BAC Information

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BAC

Clone NameMSMg01-414F11
Chromosome14 (Build37)
Map Location 15,517,834 - 15,518,303
singlet/doubletsinglet
Overlap geneLOC100042147
Upstream geneEG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
Downstream geneSlc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414F11.T7 (MSMg01no414_f11.b1)MSMg01-414F11.TJ (MSMg01no414_f11.g1)
ACCAG510660AG510661
length775750
length of high quality
(start - end)
581 (46 - 626)468 (78 - 545)
definitionCHROMAT_FILE: MSMg01no414_f11.b1 PHD_FILE: MSMg01no414_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:21 2005CHROMAT_FILE: MSMg01no414_f11.g1 PHD_FILE: MSMg01no414_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCATACCTAAACATAATAAAAGCAATGTACAGCAAGCTGG
TAGCCAACATCAAAGTAAATGGAGAGAAACTAGAAGCAATCTCACTAAAA
AGAGGGACTAGAAAAGGCTGGCCAATTTCTCCCTACCTATAATATAGTAC
TTGAAATTCTAGCCAGAGCAATTCAACAACAAAAGGACATCAAGGGGATA
CAAATTGGATAGGAAGAAGCCAAAATATCACTATTTGCAGATGATATGAT
AGTATATATAAGTGACCCCAAAATTGTTTTTAGAGAACTTCTATACCTGA
TAAACAGCTTCAGTGCAGTAGCTGGATATAAAATTAACTCAAACAAATCA
ATGGCCTTTCTCTACAAAAAATATAAACAGACTGAGAAAGAAATTAGGGA
AACAACACCCTTCACAATAGTCACAAATTATATAAAATACCTTGTTATGA
CTCTAACTAAGAAAGTTAAAGAACTGTATGATAAGAACTTCAAGTCTGAA
TAAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTGAG
GGATTGGCAGGATTAATATAGTCAAAATGGCTATCCTGCCAAAAGCAATC
TACAGATTCAATGCAATTCCCATCCAAATTCCAACTCAATTCTTCACTGA
GTTAGAAAGGGCCAATTGCAATTTTGCCTGAAAAATTAAAACCTAGGATA
GCAAAACTATTCTCACTATTTAAGA
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTACAGCTTCTCTATGCTCT
TGACTTGTTCAGCTGAATGGATGAGCTCTGCTGTAAACAGTTTTAAAGAA
TGAGTCTCCAATCATTTTTAATGCATTTTGAAGGTTCCACCTCTGAGTCA
CTGCTCACAGGTGTTTTTCGTAGTTAATCGTGGTAGCAGTGACCTTGGCA
CCTCTAATCTCTATATTCAATTAGAATACACAATATGAACTGTGGCCCAG
GATTAAGAAACAAAACTGATTTTTTTGTTACAGGCTCTTATTACACAGAC
TAACTTCCAGTTGGTCCCCAGAGTGGTGTGACTATGGCACCATATCACTA
TGTTTTAGTTTTAGTTAATTTTCATTTTATTCTGTACTTTTTCCTTACTA
CAATGTTTTTTTTCTGTAATTTTTTTGTTTATTTCTCCTTTTTTTTCTGA
GTGACAAAGTGAATGTTAATACTTTTTTTTAGTTCCTCACAGATTAATGA
ACTCTTCTTTGCCTGATAGTTCATAATTCACATCCTTTCCAGAAACTGTC
TGGAGTTGGAGAAAGCCACCTTGATAAAGATCACAAAATTTCCAGGGGAC
TGGAGAAAATTTTTTATTTCTGGGCCCCGCCACAACCTTAAAAGGCTGTC
CTGTAAACAAAGAATGTTCTTCCTTTGTACCTACGTTTCTTTTTTAAATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_f11.g1 MSMg01no414_f11.g1 CHROMAT_FILE:
MSMg01no414_f11.g1 PHD_FILE: MSMg01no414_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:21 2005
         (468 letters)



>mm_chr14_15517634_15518503
          Length = 870

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttacagcttctctatgctcttgacttgttcagctgaatggatgagctctgctgtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tttttacagcttctctatgctcttgacttgttcagctgaatggatgagctctgctgtaaa 611

                                                                       
Query: 61  cagttttaaagaatgagtctccaatcatttttaatgcattttgaaggttccacctctgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cagttttaaagaatgagtctccaatcatttttaatgcattttgaaggttccacctctgag 551

                                                                       
Query: 121 tcactgctcacaggtgtttttcgtagttaatcgtggtagcagtgaccttggcacctctaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 550 tcactgctcacaggtgtttttcgtagttaatcgtggtagcagtgaccttggctcctctaa 491

                                                                       
Query: 181 tctctatattcaattagaatacacaatatgaactgtggcccaggattaagaaacaaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tctctatattcaattagaatacacaatatgaactgtggcccaggattaagaaacaaaact 431

                                                                       
Query: 241 gatttttttgttacaggctcttattacacagactaacttccagttggtccccagagtggt 300
           ||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gatttttttgagacaggatcttattacacagactaacttccagttggtccccagagtggt 371

                                                                       
Query: 301 gtgactatggcaccatatcactatgttttagttttagttaattttcattttattctgtac 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtgactatggcaccataccactatgttttagttttagttaattttcattttattctgtac 311

                                                                       
Query: 361 tttttccttactacaatg-ttttttttctgtaatttttttgtttatttctcctttttttt 419
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttttccttactacaatgtttttttttctgtaatttttttgtttatttctcctttttttt 251

                                                             
Query: 420 ctgagtgacaaagtgaatgttaatac-ttttttttagttcctcacagatt 468
           |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 250 ctgagtgacaaagtgaatgttaatactttttttttagttcctcacagatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 870
Length adjustment: 10
Effective length of query: 458
Effective length of database: 860
Effective search space:   393880
Effective search space used:   393880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)