Query= MSMg01no414_j14.b1 MSMg01no414_j14.b1 CHROMAT_FILE:
MSMg01no414_j14.b1 PHD_FILE: MSMg01no414_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:41 2005
(584 letters)
>mm_chr14_30705418_30706401
Length = 984
Score = 992 bits (513), Expect = 0.0
Identities = 552/575 (96%), Gaps = 16/575 (2%)
Strand = Plus / Plus
Query: 10 gaattcagacttcttgcatactctacttttctatttgtaggaagggaagggaggccctgg 69
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcagacttctggcatactctacttttctatttgtaggaagggaagggaggccctgg 269
Query: 70 acagagcccatatctatctcaggcagtagcagagctggaaagtgtttcccaccccttacc 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acagagcccatatctatctcaggcagtagcagagctggaaagtgtttcccaccccttacc 329
Query: 130 cctgggttttccacctacatcctggcgcctctaatatgccatctctgtttactaacacat 189
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cctgggttttccaccaacatcctggcgcctctaatatgccatctctgtttactaacacag 389
Query: 190 ccagctgttcttagtcacatacataagaagtgaatgctttaaaagaggtcagtggattta 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ccagctgttcttagtcacatacataagaagtgaatgctttaaaagaggtcagtggattta 449
Query: 250 cacacaccatatacctccccagctgtccaagccaaatatctatacagcatctatgagccc 309
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 450 cacacaccatatacctccccagctgtccaagccaaatacctatacagcatctatgagccc 509
Query: 310 ttcgtttcccttcaagccttcttccccagccattcctgctgcttgcttaagagtgtctag 369
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 510 ttcgtttcccttcaagccttcttccccagccattcctgctgcttgcgtaagagtgtctag 569
Query: 370 atcagctccccattagacatgcacctgagcacatgcatctctccctgccttggaagtggg 429
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 a----------------catgcacctgagcacatgcatctctccctgccttggaagtggg 613
Query: 430 gctgtacctctacactgtagctgtacagcttgagtccctctggggcatccagggccttga 489
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 614 gctgtacctctacactgtagctgtatagcttgagtccctctggggcatccagggccttga 673
Query: 490 gtgctgggcaggagggaatttcaggacaagtagaacaaaatgaagtgggtgagctccttg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gtgctgggcaggagggaatttcaggacaagtagaacaaaatgaagtgggtgagctccttg 733
Query: 550 actcgggagtagcactgtcacattcaaagagagag 584
||||||||| |||||||||||||||||||||||||
Sbjct: 734 actcgggaggagcactgtcacattcaaagagagag 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_j14.g1 MSMg01no414_j14.g1 CHROMAT_FILE:
MSMg01no414_j14.g1 PHD_FILE: MSMg01no414_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:41 2005
(269 letters)
>mm_chr14_30880023_30880687
Length = 665
Score = 493 bits (255), Expect = e-144
Identities = 264/269 (98%), Gaps = 4/269 (1%)
Strand = Plus / Minus
Query: 1 ccacgcctcggttggagtgctttattccccttctcttaaacatccttagttcttctgaca 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ccacgcctgggttggagtgctttattccccttctcttaaacatccttagttcttctgaca 406
Query: 61 tgggacaccattttataagggagaatacaagctcacctaagatcctcttgtccccagtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgggacaccattttataagggagaatacaagctcacctaagatcctcttgtccccagtcc 346
Query: 121 acgggactcttgcaaggatagcttgaccagaagcctgaggacctacatacaactgatcct 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 345 acgggactcttgcaaggatagcttgaccagaagcctgaggacc----tacaactgatcct 290
Query: 181 cagcctctgcaggtccttccaggtgtcctggaatccctaacatagccctactcaggccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cagcctctgcaggtccttccaggtgtcctggaatccctaacatagccctactcaggccag 230
Query: 241 gctgctaatggagccttgctgctttctgc 269
|||||||||||||||||||||||||||||
Sbjct: 229 gctgctaatggagccttgctgctttctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 665
Length adjustment: 9
Effective length of query: 260
Effective length of database: 656
Effective search space: 170560
Effective search space used: 170560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
