BAC Information

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BAC

Clone NameMSMg01-414M23
Chromosome14 (Build37)
Map Location 87,980,623 - 87,980,869
singlet/doubletsinglet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414M23.T7 (MSMg01no414_m23.b1)MSMg01-414M23.TJ (MSMg01no414_m23.g1)
ACCAG511018AG511019
length755828
length of high quality
(start - end)
247 (78 - 324)80 (78 - 157)
definitionCHROMAT_FILE: MSMg01no414_m23.b1 PHD_FILE: MSMg01no414_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:58 2005CHROMAT_FILE: MSMg01no414_m23.g1 PHD_FILE: MSMg01no414_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAACGG
CGGAATTCTCAATTCATACACTACAGGGATCTATCTGCCTGTCTCTATCT
CCCAAACCCAGCCCTTATATTACAGATAAGTGCTGCCCAGCTTGGCTTTT
ACCTGATTCCTGGGGATCTAAACTCAAGTCTTCTTCCACATCAGCTGAGC
CATCTCCCCTGCTTAGACCTATTAGTCTATCTTGTAACTAGTAAAATCTG
CGCTGTCCTCAGCCCTCAAAAGCTTTGTACTCAGCGTAGGAAAAGTGGTG
TCTTTGAGAGGCTGTTAGAAATGCTAATCCTTGAGAGCCTGCCCTGTGAT
CTGCAGATCAGAGTCAGCTTTTAGCAACCCCCAGCTAATCCTGAAGCGCA
TTCAAGTTTGAAACACATTCTCCCGAAGGAGGGGTCAGACAGCCACCACC
TGTGTTCTACAAATAAAGTCTCACTGCCACACAACTTATGCTCTGTTTGC
ATGGCCCCTGGCTTTAAGGTGCTATAACTGCAGTGCTGAGGTAGTTGCAG
TGGAGTCTGTGCCTTCCTGAGTTTAATAGCTTACTCTCTGCTCCTTTAAA
AACAATGGAAGAAACGGCTATTCATAACTAACAAGATTCTGTTTCTGAAC
AAAAGAAATATTTTTTTTATTTATGTGCCAATGATTAGAATTTTGAAAAA
CAATTGCAATAAAAACCTCCAAAAATCAAATTCCATTCCGTGTATTTTAT
TTAAG
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGACATGCTACATTTCTCCA
TTAANCCTGGGCTGAGTGATATGACTTAAGATATGTCCCTAGGCTATCAC
TCTAATANTGGTANNNNACTTCCTGAAAGAGCATGACNNNNNNNNNNGAT
ACATAAGTGCTGCGGGGGGGGGTGTGGCTCGGGAGTGGGGGGGAGTGGGG
GCGGGGTAACAATCTGGTNAGGGGTCCTTGAAACCAGAAAACTTNNNNNC
CTTNNAAAACCCTCCCTTAATAAAAAAAAAAAAAGCGCTTTTTTTTNAAA
AGGGTGGGACCCCTGGACTTGGGATGTCCTAGGAACAACCCCCTAAAAGG
GGTTAAAAGTTAACTTCTTCCCCTTTTTAAAAAAAAAAGGGGGCTAAAAA
AAAAACCCCCCCTCTTGGGGGACATTTTTGATAATTTTTGGGGGGAAAAC
CACCCCTTTTTTTTTCTCTATAAAAAAAAAAGTTCCCCCCCCCGGGGGAA
CCCCCCCCAAAAAAACCCCCCCACCCCCCCTTTTTTTGGGGGAACCAAAA
AAAATTTTCCCCCCCACAAAAAAAAACTTCCCCGCCACTCTTTTAAAAAA
GGGGGTAATAATCCCCCCCCCCCCCCAATTTTTTTAAAATACCCTCTTCC
TTCATAAAACATCCCCCTNANNTAAAAAAACNAACCCCTCCCCCCCCCCC
CCTCCTCNAAATATTAAAAACAATTANCTTCTTTTCCCCCCCCTTTTTCT
TTCCTTTCCCCATCCGGGCGCGAGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_m23.b1 MSMg01no414_m23.b1 CHROMAT_FILE:
MSMg01no414_m23.b1 PHD_FILE: MSMg01no414_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:58 2005
         (247 letters)



>mm_chr14_87980423_87981069
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatctatctgcctgtctctatctcccaaacccagcccttatattacagataagtgctgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatctatctgcctgtctctatctcccaaacccagcccttatattacagataagtgctgcc 260

                                                                       
Query: 61  cagcttggcttttacctgattcctggggatctaaactcaagtcttcttccacatcagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcttggcttttacctgattcctggggatctaaactcaagtcttcttccacatcagctg 320

                                                                       
Query: 121 agccatctcccctgcttagacctattagtctatcttgtaactagtaaaatctgcgctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccatctcccctgcttagacctattagtctatcttgtaactagtaaaatctgcgctgtc 380

                                                                       
Query: 181 ctcagccctcaaaagctttgtactcagcgtaggaaaagtggtgtctttgagaggctgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagccctcaaaagctttgtactcagcgtaggaaaagtggtgtctttgagaggctgtta 440

                  
Query: 241 gaaatgc 247
           |||||||
Sbjct: 441 gaaatgc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)