BAC Information

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BAC

Clone NameMSMg01-414N02
Chromosome14 (Build37)
Map Location 73,124,717 - 73,125,263
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668477, LOC668482, LOC675957, Fndc3a
Downstream geneLOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414N02.T7 (MSMg01no414_n02.b1)MSMg01-414N02.TJ (MSMg01no414_n02.g1)
ACCAG511024AG511025
length714782
length of high quality
(start - end)
---533 (75 - 607)
definitionCHROMAT_FILE: MSMg01no414_n02.b1 PHD_FILE: MSMg01no414_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:59 2005CHROMAT_FILE: MSMg01no414_n02.g1 PHD_FILE: MSMg01no414_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:32:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTCGCCCTAACACTATATTTCAAGNATCCNAATTTCTGAATATACATT
GAGNTCAGTGTTGAAGACAATCAGGATGCTGCCTCTGTTCTGNACAGAAT
AAGGACTGACCATGGGGGGGTTTTTGGGGGTTGAGGAGGAAGGTACGGAT
AGGGAATTTTAATGAAAACAAAAATTNCTAATAAAATTTGCCTTNGGNCG
NAAAGCCTTAAGATTGGNGGTTCTTGTTTACATTTGGGTGTAGACGAAGG
AGCTCTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTCCCCCCC
CCNNNNNNNNTNTTTTTTNNNTTTNNNNNTTTNNNNAAAAAANTNNNTNT
NNNNNNNNNNNNNNNNNNNNNNTTNNNNNNNNNTNNNTTTTTNNNNNTTT
NNTNTNTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNTTTCTTTNTNTN
NNTNTTNNNNNNNNNNNTTNTNTNNTNTTTTNTTTTNNNTTTTTNNNNTT
TTTTTNTNCATNNNNNNNNNNNNNTTTTCTTTNTNTNTTTTTTNTNNNNT
NATTTNNNNNNTNTNTTCTTTTTTCCNTTTTCTCTCTTCTTTCCTATCCC
CTTCTTTCTCCCCCCCCCCCCCCCCCCCTTTCNCTTCTTNCNCCNTCCCC
CTTCTCCTCTTTTTTTCTCCCTTTCCTCCNCCCTTTCTATTCCTATATTT
TTTATATTATAATG
GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTTCGTTATACCTCTTTGGGACTCT
AAGCACCTGTATGCTTGAATTTGTTGAGGTTTGGAATTTCTCAGCTATAA
TTTTATTGAAAAAAATTTTCTAAACTTTAAAGCAGTTTCTTAGCACCTTC
CAAATACATCCATGCTCATGGTTCACGGAGCAAGTATAAAAATGCAAAAT
GAAAAATTTAAAACTGGGGGGGGGATTAGAGTCCCAAAGATAAACCAAAC
AGAAATTCTGGAACAATTTCAAATGATAATTAAAAAAACCACAAAAATTA
TTTACCATACAAGACCAAGTAGAAGAACAAAGGCCAAAACAATAATATAG
ACAGACACATTTAAAGAAAAACATTAACAAATATGACCAAAAATCCCCCA
AACTCTAGGATATGTTCAAGACATCAAGCCTATTATTACTTATTTTAAAA
GTCCAGATTTCTTAAATAGAGAGAAGGGTCGTTAGTTTCAGTAATCCAAA
CAAGCAAGCATATTCTTCCAGGGAAAGATGGCTCTGTGGTCCGAGGCTAC
TTTCTGCCCGTTTTCTCANGCCTGATTTCCCCAGGTTGCAAACTACACCT
CTATCTCGAGTTTTTCGGAAAGTCTGGGGAGAGCTCTCTCTGNGGCTTGG
AGGTTTCAGGAATAATATGGAAAGCCCNCTTAACTGGGGTTATCTCTTTA
CCACCTCCCTGTAAGGTAGCCAGGTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_n02.g1 MSMg01no414_n02.g1 CHROMAT_FILE:
MSMg01no414_n02.g1 PHD_FILE: MSMg01no414_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:59 2005
         (533 letters)



>mm_chr14_73124535_73125463
          Length = 929

 Score =  810 bits (419), Expect = 0.0
 Identities = 510/553 (92%), Gaps = 26/553 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttc--gttatacctctttgggactctaagcacctgtatgcttgaatttgttgaggttt 58
           |||||  ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 183 ttttccagttatacctctttggaactctaaacacctgtatgcttgaatttgttgaggttt 242

                                                                       
Query: 59  ggaatttctcagctataattttattgaaaaaaattttctaaactttaaagcagtttctta 118
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggaatttctcagctataatttcattgaaaaaaattttctaaactttaaagcagtttctta 302

                                                                       
Query: 119 gcaccttccaaatacatccat----gctcatggttcacggagcaagtataaaaatgcaaa 174
           |||||||||||| |||||| |    ||||||||| |||||||||||||||||||||||||
Sbjct: 303 gcaccttccaaacacatccgtccgtgctcatggtacacggagcaagtataaaaatgcaaa 362

                                                                       
Query: 175 atgaaaaatttaaaactgggggggggattagagtcccaaagataaaccaaacagaaattc 234
           ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 363 atgaaaatttttaaactgggagggg-attagagtcccaaagataaaccaaacagaaattc 421

                                                                       
Query: 235 tggaa--------------caatttcaaatgataattaaaaaaaccacaaaaattattta 280
           |||||              ||| | |||||||||||||||||||  ||| ||||||||||
Sbjct: 422 tggaaatgaaaaaaaacaacaaat-caaatgataattaaaaaaaa-acagaaattattta 479

                                                                       
Query: 281 ccatacaagaccaagtagaagaacaaaggccaaaacaataatatagacagacacatttaa 340
           ||||| ||||||||||||||   |||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccatataagaccaagtagaa---caaaggccaaaacaataatatagacagacacatttaa 536

                                                                       
Query: 341 agaaaaacattaacaaatatgaccaaaaatcccccaaactctaggatatgttcaagacat 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 agaaaaacattaacaaatatgaccaaaaatcccccaaactctaggatatgttcaagacat 596

                                                                       
Query: 401 caagcctattattacttattttaaaagtccagatttcttaaatagagagaagggtcgtta 460
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 597 caagcctattattacttattttaaaagtccagatttcttaaatagagagaagggttgcta 656

                                                                       
Query: 461 gtttcagtaatccaaacaagcaagcatattcttccagggaaagatggctctgtggtccga 520
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 657 gtttcagtaatccaaacaagcaagcatattcttccagggaaagatggttctgtggtccga 716

                        
Query: 521 ggctactttctgc 533
           | |||||||||||
Sbjct: 717 gactactttctgc 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 929
Length adjustment: 10
Effective length of query: 523
Effective length of database: 919
Effective search space:   480637
Effective search space used:   480637
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)