BAC Information

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BAC

Clone NameMSMg01-415B08
Chromosome14 (Build37)
Map Location 84,747,091 - 84,940,422
singlet/doubletdoublet
Overlap genePcdh17, 9630013A20Rik
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285
Downstream geneLOC629794, LOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415B08.T7 (MSMg01no415_b08.b1)MSMg01-415B08.TJ (MSMg01no415_b08.g1)
ACCAG511226AG511227
length751754
length of high quality
(start - end)		450 (42 - 491)411 (71 - 481)
definitionCHROMAT_FILE: MSMg01no415_b08.b1 PHD_FILE: MSMg01no415_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:21 2005CHROMAT_FILE: MSMg01no415_b08.g1 PHD_FILE: MSMg01no415_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,747,091 - 84,747,536)(84,940,012 - 84,940,422)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTAATTGATAGCTCTAGTAAGAAAAGTCTTTTTAATGGATCCATCCTC
TAAGGATCTCTACAAGGATATAACTGTAAATGAAATAGTGTTAAAGCTGT
ACATAGTGACTATTTCCTATAATCCTTGTACTTTGAGATACTGAGGCAGA
AGGATTACAGTTAGAATCCACCCAAGGCTACTCAGTGAGTATCTAAAAAA
TATGAGCCAGTAACAAATGAGTTGAAAAGTAAATCAAAGCATTATTGTGG
TAACAGTCCAGACATCCACTTCTTTATCCAAGAAATAATGTCAATGGTAC
CACAAACACTTTAAAATTCAAATGAAATGTCATAAGCAGATACAGATAGA
GGAATAGATAGTGAGAAAGTCTGCATAAAAGTCAATCACTTTATATTTAT
TTAACCCTGGCTAATCCAATCTTCTTGTTGCTATATGGTGTAAGCAAGCC
ACTATCTCTCACATTTGCCTATACAGATGCAGGAAAGTAGCTCTTCCCTA
CCCCTAAAATAAAACCCATTATGGTGCTTTAATCATTTCCTTATTTGGAC
CCCCCCAAGTTCACCCACCATACTCCTCCTTTCCAAATATTATTACTGTT
TCACTGCACTTCCCCATTCTGTCTCCACGCCTGCCCTCCACTGGTTTCTC
TCTTCCATCCCTTACAATTTCTTTTCCTCTTTCTCTTTCCCCATCGGGTT
N

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGATAATTAGTACTGAGCTATTTAAATG
ACTAGTGAAGTTAATGACTATCACATCTGATCCACTTTAATATAGATTTC
AAAAATATATATTAATAAATCAACACTAAATGGGCATTAGCATAATTGGT
CTTCTTGAGATTAAGACACGGTTTCTGTGAGATGTGTAGAGAGATAGTAA
ATTAAGATTTAGTTAATTTAAGTTTGCTAATTAAAATCAAATCAAATTTA
TTTTCAATGGACTACAATGAAATAAACTTTGATAGTATTGCTGTCTTTCC
TTTTGAAGGCTGAAAAGATGCAAAATGCACCACACAGTTAGATTTAAAGA
GGCCAGTCAAGTCTACATTTGTTAAGTGGCTGTTAGCTATATCAGAATTA
CTTGACTTACACTCCTTTATTTTATCTTAGTACCTTTTGATATTACCAGA
TTCTCATCCACTTATATCTATGTTAACATAGTTCTAACACGACTAGAGAT
GCAAGGAATATCCCTAAGGCATTCCATCAATGAGCCCCACTAGCTCAGGT
GCTCTCAGTTCCTTCGGCTCTCACCCTCTTCATTGGTTCCCCTGCTTTCT
TCGTTCCCCCTTCGCCCTCTTTCCCATCTCCTCTCTCCCATAACCCTTTT
CCTTCCTTTTTCCTCCTGTTGGCCCTTGTTCCATCCTTTTACCGTTCTCC
CCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_b08.b1 MSMg01no415_b08.b1 CHROMAT_FILE:
MSMg01no415_b08.b1 PHD_FILE: MSMg01no415_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:21 2005
         (450 letters)



>mm_chr14_84746887_84747736
          Length = 850

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaattgatagctctagtaagaaaagtctttttaatggatccatcctctaagg 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaactgatagctctagtaagaaaagtctttttaatggatccatcctctaagg 264

                                                                       
Query: 65  atctctacaaggatataactgtaaatgaaatagtgttaaagctgtacatagtgactattt 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctctactaggatataactgtaaatgaaatagtgttaaagctgtacatagtgactattt 324

                                                                       
Query: 125 cctataatccttgtactttgagatactgaggcagaaggattacagttagaatccacccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctataatccttgtactttgagatactgaggcagaaggattacagttagaatccacccaa 384

                                                                       
Query: 185 ggctactcagtgagtatctaaaaaatatgagccagtaacaaatgagttgaaaagtaaatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggctactcagtgagtatctaaaaaatatgagccagtaacaaatgagttgaaaagtaaatc 444

                                                                       
Query: 245 aaagcattattgtggtaacagtccagacatccacttctttatccaagaaataatgtcaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagcattattgtggtaacagtccagacatccacttctttatccaagaaataatgtcaat 504

                                                                       
Query: 305 ggtaccacaaacactttaaaattcaaatgaaatgtcataagcagatacagatagaggaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtaccacaaacactttaaaattcaaatgaaatgtcataagcagatacagatagaggaat 564

                                                                       
Query: 365 agatagtgagaaagtctgcataaaagtcaatcactttatatttatttaaccctggctaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agatagtgagaaagtctgcataaaagtcaatcactttatatttatttaaccctggctaat 624

                                     
Query: 425 ccaatcttcttgttgctatatggtgt 450
           ||||||||||||||||||||||||||
Sbjct: 625 ccaatcttcttgttgctatatggtgt 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no415_b08.g1 MSMg01no415_b08.g1 CHROMAT_FILE:
MSMg01no415_b08.g1 PHD_FILE: MSMg01no415_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:21 2005
         (411 letters)



>mm_chr14_84939712_84940522
          Length = 811

 Score =  748 bits (387), Expect = 0.0
 Identities = 405/411 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagataattagtactgagctatttaaatgactagtgaagttaatgactatcacatctga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ttagataattactactgagctatttaaatgactagtgaagttaatgactatcacatctga 652

                                                                       
Query: 61  tccactttaatatagatttcaaaaatatatattaataaatcaacactaaatgggcattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tccactttaatatagatttcaaaaatatatattaataaatcaacactaaatgggcattag 592

                                                                       
Query: 121 cataattggtcttcttgagattaagacacggtttctgtgagatgtgtagagagatagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cataattggtcttcttgagattaagacacggtttctgtgagatgtgtagagagatagtaa 532

                                                                       
Query: 181 attaagatttagttaatttaagtttgctaattaaaatcaaatcaaatttattttcaatgg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 attaaaatttagttaatttaagtttgctaattaaaatcaaatcaaatttattttcaatgg 472

                                                                       
Query: 241 actacaatgaaataaactttgatagtattgctgtctttccttttgaaggctgaaaagatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 actacaatgaaataaactttgatagtattgctgtctttccttttgaaggctgaaaagatg 412

                                                                       
Query: 301 caaaatgcaccacacagttagatttaaagaggccagtcaagtctacatttgttaagtggc 360
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
Sbjct: 411 caaaatgcaccacacagttagatttaaagaggccagtcaagtctaaatttgttaggtgcc 352

                                                              
Query: 361 tgttagctatatcagaattacttgacttacactcctttattttatcttagt 411
           |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgttagttatatcagaattacttgacttacactcctttattttatcttagt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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