Query= MSMg01no415_c04.b1 MSMg01no415_c04.b1 CHROMAT_FILE:
MSMg01no415_c04.b1 PHD_FILE: MSMg01no415_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:25 2005
(240 letters)
>mm_chr14_79622055_79622694
Length = 640
Score = 424 bits (219), Expect = e-123
Identities = 238/249 (95%), Gaps = 9/249 (3%)
Strand = Plus / Plus
Query: 1 tatagtctagtccatatctcctgcctccaagactggtttccttgcc-cacagcatgagct 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tatagtctagtccatatctcctgcctccaagactggtttccttgccacacagcatgagct 260
Query: 60 gtggtatagctcctgccacagaggtttcctgagccatctccaaatagccccaggttttat 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtatagctcctgccacagagatttcctgagccatctccaaatagccccaggttttat 320
Query: 120 tctttgtcctctgtggtcgagggctagaggc--------cacctccaaataaaatttcct 171
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tctttgtcctctgtggtcgagggctagaggcaccttggccacctccaaataaaatttcct 380
Query: 172 cagccatactgaatagcctgggaaatgtaggaacttcacaaaccctagtggtcgctagag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cagccatactgaatagcctgggaaatgtaggaacttcacaaaccctagtggtcgcgagag 440
Query: 232 gccacaccc 240
|||||||||
Sbjct: 441 gccacaccc 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_c04.g1 MSMg01no415_c04.g1 CHROMAT_FILE:
MSMg01no415_c04.g1 PHD_FILE: MSMg01no415_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:25 2005
(285 letters)
>mm_chr14_79774105_79774786
Length = 682
Score = 493 bits (255), Expect = e-144
Identities = 277/285 (97%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 1 aatagatgattttagcattaacagttgtttttccatgtagtaaagttacagataacatgg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 367 aatagatgattttagcattaacagttgtttttccatgtagtaaggttacagataacatgg 308
Query: 61 gggcatgaaaattaactaaaatgttcatacttaaataacaatactaatagatgcttttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gggcatgaaaattaactaaaatgttcatacttaaataacaatactaatagatgcttttag 248
Query: 121 attcctttactcattttaaatctttttttttttaaattcatattagggtttatattactc 180
||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct: 247 attcctttactcattttaaat--ttttgtttttaa-ttcatattagggtttatattactc 191
Query: 181 agggtctctagaggaaccaggctgatagaatgaatatgtatttatgtaaaatcggattta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 190 agggtctctagaggaaccaggctgatagaatgaatatgtatttatgtaaaattggattta 131
Query: 241 ttagaatgccttccaggctgtggtccaactattgaacaatggttg 285
||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ttagagcgccttccaggctgtggtccaactattgaacaatggttg 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 682
Length adjustment: 9
Effective length of query: 276
Effective length of database: 673
Effective search space: 185748
Effective search space used: 185748
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
