BAC Information

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BAC

Clone NameMSMg01-415D20
Chromosome14 (Build37)
Map Location 68,442,755 - 68,443,233
singlet/doubletsinglet
Overlap geneDock5
Upstream geneDpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1
Downstream geneNefl, Nefm, LOC100043072, Adam7, Adamdec1, Adam28, LOC641033, LOC100043082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415D20.T7 (MSMg01no415_d20.b1)MSMg01-415D20.TJ (MSMg01no415_d20.g1)
ACCAG511345AG511346
length851740
length of high quality
(start - end)		92 (36 - 127)479 (66 - 544)
definitionCHROMAT_FILE: MSMg01no415_d20.b1 PHD_FILE: MSMg01no415_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:34 2005CHROMAT_FILE: MSMg01no415_d20.g1 PHD_FILE: MSMg01no415_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCGCGGAATTCTTTTT
TTATACATCTTTTTGTTGTTGTTGTTTTATGATGTATATGTGTATGTGTG
TATGGTAGGTCTATGAGTATGTGTGCGNGACTCTNTCTCTTTCTCTCGTC
TCTCCTCCCTTCGTCCGATCCTCCTCTCACTCCCCCCCTCTTCGTTTGTC
CCCCTTTCTTTCTCCTTCCTCGCCTACCCTCCCGCCCCCTTCTTATTACA
CCCTATTCTTTCTCACCCCTTACCCTCCCTTCGTCCCTACCACCCCCATA
CCCTTTTTTTTTTCTCCACCTCTCCCCCCTCACTCTCTCTCCTTCTCTCC
CCCCCCATCCCCTCACCCCTGCCCTCCCCCTCTCAAACCACCCACTCTAC
CTTCCCCCCCCTCCCCCCCCTCTTTCTCCTCTTCTCCTCCCCCTGTCCCC
ACCCCCTCTTCTCCCTACTTCTTTTTCTTCCCTTTTTTCTACCCCCCAAT
CTTTATTCCCCCCCCCCCTTTCCCTCTCCCCCTCTCCCCCACCTTTCCTT
CCCTCTCTTCTTTTTTCCCTCTCTTTCTTTTACCCCCCCCCCCCTCAATC
CTCTCCTTTCTCCCACCCTCGCCTCACTTCCCCCCCATTTTTCCTCCCCT
TACCCCCCCTTACCCCCCCTTCCCCCTCTCTTTCTTTTTATACTCTCCCA
CCTTCNCATTCCTTCTCATCCTTTTTCCTCTCTTTTTCCCCTCCCCCCTT
CCCCTTCTTTCTTTTTTCCCCCCCTATTTTTCTCCTTTCTTTCCCCACCT
CCCCTCCCCTTCCCTTTTCCTCTCCTCTATCCTCCTTCCCCTCTTCTGTT
G

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAACTTAGGTCCTCTGGAAGAGCAGCAAGAGGTCT
TAATCATTGCACCATCTCTCTAGCCCCTGACATTCATTTCTTTTTTTCAT
GATTTGCCCTGACTCTGACATCCCTAATTAGATTTCCATGTTGTGTGTGT
ATATGTAACGGTTTCTAATAACGTCTATTATTTCTGGCACCACCACCACA
TAATCTTACACTTGGAGCAAACATACTTTGGTATCAGTTGGGATAATCTT
TACTCTTTTTGTTCTCCACTGAAGTCACCAATATCTGTTGACTTCTCAGG
TAAGGAGGCCTCTTGTGAGTTTGAAGGAAACATCATCAAAACGATGTTAC
CCAGGGAGGATTACGTGTTTATTTGAGGTGTCTGATTGGTCTCACACGAG
CTTCTGTGAGTGTGTTGCAAAGATTATAAGAGAACTGTAAGTTTGTCCCC
TTTTTTCCCCTTACAGGTCTTTGGGTGTCCTTAAAGTTACTGCCAGGCGA
CCTCACACAGGTGCAGAAGAACTTTTCCCACCTGGTGGACAGATCCACAG
CTATAGCACGGGAAATGGCGTTTTCCACAAAAAATCCTGCCATTTATTCC
CCTTGCCCGAAGCTCCACTTGCGCTCTCCTCTTTCTTTTTCGTTTGCTCT
GCTCCTCCTTTTCCCTGTTTCTTCCTTTTCTCTCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_d20.g1 MSMg01no415_d20.g1 CHROMAT_FILE:
MSMg01no415_d20.g1 PHD_FILE: MSMg01no415_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:34 2005
         (479 letters)



>mm_chr14_68442493_68443371
          Length = 879

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaacttaggtcctctggaagagcagcaagaggtcttaatcattgcaccatctctctagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaacttaggtcctctggaagagcagcaagaggtcttaatcattgcaccatctctctagcc 682

                                                                       
Query: 61  cctgacattcatttctttttttcatgatttgccctgactctgacatccctaattagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgacattcatttctttttttcatgatttgccctgactctgacatccctaattagattt 622

                                                                       
Query: 121 ccatgttgtgtgtgtatatgtaacggtttctaataacgtctattatttctggcaccacca 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccatgttgtgtgtgtatatgtaatggtttctaataacgtctattatttctggcaccacca 562

                                                                       
Query: 181 ccacataatcttacacttggagcaaacatactttggtatcagttgggataatctttactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacataatcttacacttggagcaaacatactttggtatcagttgggataatctttactc 502

                                                                       
Query: 241 tttttgttctccactgaagtcaccaatatctgttgacttctcaggtaaggaggcctcttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttgttctccactgaagtcaccaatatctgttgacttctcaggtaaggaggcctcttg 442

                                                                       
Query: 301 tgagtttgaaggaaacatcatcaaaacgatgttacccagggaggattacgtgtttatttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtttgaaggaaacatcatcaaaacgatgttacccagggaggattacgtgtttatttg 382

                                                                       
Query: 361 aggtgtctgattggtctcacacgagcttctgtgagtgtgttgcaaagattataagagaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtgtctgattggtctcacacgagcttctgtgagtgtgttgcaaagattataagagaac 322

                                                                      
Query: 421 tgtaagtttgtccccttttttccccttacaggtctttgggtgtccttaaagttactgcc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaagtttgtccccttttttccccttacaggtctttgggtgtccttaaagttactgcc 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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