Query= MSMg01no416_m19.b1 MSMg01no416_m19.b1 CHROMAT_FILE:
MSMg01no416_m19.b1 PHD_FILE: MSMg01no416_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:30 2005
(542 letters)
>mm_chr14_33358093_33359034
Length = 942
Score = 986 bits (510), Expect = 0.0
Identities = 529/536 (98%), Gaps = 4/536 (0%)
Strand = Plus / Minus
Query: 9 gaattccaggagtttctc--gtctgccttgaaacaagggagggagggagataaggaacag 66
|||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gaattccaggag-ttc-caggtctgccttgaaacaagggagggagggagataaggaacag 685
Query: 67 acagacacacaatcagacaaatgagcccatctcattgcaaaccttggttcttggtgagct 126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagacacacagtcagacaaatgagcccatctcattgcaaaccttggttcttggtgagct 625
Query: 127 gctacttaactcctttcagtagatgtgccataattaattttctcttgatattaagtcaat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctacttaactcctttcagtagatgtgccataattaattttctcttgatattaagtcaat 565
Query: 187 taagtgtgaatctggtggtaacatcattgctcatgtgtaagaaaaattttgagacactta 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taagtgtgaatctggtggtaacatcattgctcatgtgtaagaaaaattttgagacactta 505
Query: 247 ctgcttattagtttggctaattataataaatacactgattatacactttggaggaagaat 306
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 ctgcttattagtttggctaattataataaatacactgaaaatacactttggaggaagaat 445
Query: 307 taaaaaatcaaaacccaattaaatataaaaataagacaatttgagaagacaagccccata 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taaaaaatcaaaacccaattaaatataaaaataagacaatttgagaagacaagccccata 385
Query: 367 gatgcattgcatgccctgggaccacaatgtctcccactgaacagacctatctgcagggag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gatgcattgcatgccctgggaccacaatgtctcccactgaacagacctatctgcagggag 325
Query: 427 gctctggactaggcaggctccagtgggggttggtggcatattttataggaaggaaaaggc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gctctggactaggcaggctccagtgggggttggtggcatattttataggaaggaaaaggc 265
Query: 487 tcaggaaaagagggaggggttaagggaggagagtgacacacaaacaaagttgaaat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaggaaaagagggaggggttaagggaggagagtgacacacaaacaaagttgaaat 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_m19.g1 MSMg01no416_m19.g1 CHROMAT_FILE:
MSMg01no416_m19.g1 PHD_FILE: MSMg01no416_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:30 2005
(504 letters)
>mm_chr14_33187453_33188355
Length = 903
Score = 830 bits (429), Expect = 0.0
Identities = 477/505 (94%), Gaps = 21/505 (4%)
Strand = Plus / Plus
Query: 1 caggacagccagggctgcacagagaaaccctgtctc-aaacaacaacaacaacaacaaca 59
|||||||||||||||| |||||||||| ||||||| ||| |
Sbjct: 219 caggacagccagggctacacagagaaattctgtctcgaaa-------------------a 259
Query: 60 acaacaacaacaacaacaacaacaacaaagcgttggctttgtcctcttaccatgtgagcc 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 acaacaacaacaacaacaacaacaacaaagagttggctttgtcctcttaccatgtgagcc 319
Query: 120 ctggatcaaactcagatctctagacttggcctcaagctccttttatccactgagtggtct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctggatcaaactcagatctctagacttggcctcaagctccttttatccactgagtggtct 379
Query: 180 cactgactcttacatttattataaatgtttatgtgaaagtgttttcttctatggtttgga 239
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 cactgactcttacatttattataaatgtttatgtgaaagtgtttttttctatggtttgga 439
Query: 240 ataggtttttcttttcaggtttgtgtcctggaagtttggcctgccgtgtaatggtggaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ataggtttttcttttcaggtttgtgtcctggaagtttggcctgccgtgtaatggtggaat 499
Query: 300 ccctgagaggcaggacctaataggaggtagcagagtcatgactgattcttgtagagggga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccctgagaggcaggacctaataggaggtagcagagtcatgactgattcttgtagagggga 559
Query: 360 ctgaatctggcctcacaggcctcaagagttattgtaaaaagcaaacttagaggccctgtc 419
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 ctgaatctggcctcacaggtctcaagagttattgtaaaa-gcaaacttagaggccctgtc 618
Query: 420 tcgtggtccctctcacagtgggcgtcacctgccatgtaatgatacatcaccagacaccaa 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcgtggtccctctcacagtgggcatcacctgccatgtaatgatacatcaccagacaccaa 678
Query: 480 catcacacggtttagactttctaga 504
|||||||||||||||||||||||||
Sbjct: 679 catcacacggtttagactttctaga 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
