BAC Information

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BAC

Clone NameMSMg01-417D02
Chromosome14 (Build37)
Map Location 117,315,722 - 117,472,500
singlet/doubletdoublet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417D02.T7 (MSMg01no417_d02.b1)MSMg01-417D02.TJ (MSMg01no417_d02.g1)
ACCAG512832AG512833
length752739
length of high quality
(start - end)
614 (45 - 658)577 (84 - 660)
definitionCHROMAT_FILE: MSMg01no417_d02.b1 PHD_FILE: MSMg01no417_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:00 2005CHROMAT_FILE: MSMg01no417_d02.g1 PHD_FILE: MSMg01no417_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,315,722 - 117,316,331)(117,471,924 - 117,472,500)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTATGAAAGTAATTTACAAAATACATTAAGCTCTTTCACGATCTT
TCTAAAGGAAAAGCCAAATAGTTTTAAATATATTGCAAGGTCATTATCAT
TTTTGTCTTAGATCTGACTTTTCATTAGTTACTTTGTGAACTATGTGTTG
CACGCATATCTAAATTTGCTTAGGCTTTACGTGACACAAACTGATTTTTA
TGTGTGCCTTGGAGAATCACATTCCAATGATGGCTTCATTGTTTAAAATA
AAGATGAAATTCCAGTTTTTAAATTACTGCAGTAAAATGTTCTTTTCTTT
TCTTCTTCCTCTCAAATTTGTATAAGCCAACGTTGCTCCATGGAGACTGT
AACATGATCCTTCATCTTTTGAATTTTTGTATCAAATCACCATTTTAAAC
TCCTGAGAGCAGGAGAAGCCAGGCAAGCCCGGTACACTTTTAAAATAAGG
TCGTTCGACCCTCTTTGGAGTTGAAAACTCAGTTATCAACTTAAATTAAG
GTGGAAGTCAGAGCAGATTTGCTGTCTCTCTAAGCAGTGCACACTTACAC
TGCTGTTCATTACCAAGAACATGCCGGTACATGTTTGTTTCCCAGGAAAA
ATAAAGCCCTATTCATTATTCACAGAGGTCCTCCTGTACAGTAACGACAT
TCATTCTCTAATGGTTCCATGACTGGGGTGTTGTGAAGCCCAAAGTGTTA
TT
NNNCCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGATCAAGGAATGGA
GGGGGAAACAGTGAGATTCAAAGATGGAAGGCTTGGGTTCTAAGACAGCT
TCTGCAGTTTATTAGCTGTCTTTGGACAACACTTAACTTCTCCTAATCGA
GTGTTGTCTTCTATGACAGGAAGCCTCTATGTATCTCTCCCAGTTTTTTC
TCAAAGTCCAATGAAATGTATTCAAAGTCCAGTAAATATTTAAACACTTG
CCAACAAAAGTGTTTACACAGCAAAACTTCACCATCTCCATTACTTATGG
CGCAGTGCATTGTGCAATCATAGGAGAAGGTTGCCCATTCATCTAGAGAT
AGATTACATTTTCACTGATTCTTTCGTCCACAACTACTGTAAGACAAAGT
ATTTAGCTTTTGAAGTAGTTGCTCAGTAATAATAGAATTGTTAAAGCTAA
TGGTTGAAAACTATTAGAAATGCATAAGGCAAATAACAAAGCCAAACTAA
AAGCTAGAAAATCCATTGAATTTCTCAACAACTTCCCACAACATTAAATC
AGTAGGGAAACTCACTTAAACCTGCTATCTTGTAGGAAAGCACAATTCGT
GTTGATAAGCAGAACAGGACAAATACTTATTGCCGTCGCTTTGGAGCCCG
AAGTTCCTCACCTTCCCAACTGCTCCCCCTACAGTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_d02.b1 MSMg01no417_d02.b1 CHROMAT_FILE:
MSMg01no417_d02.b1 PHD_FILE: MSMg01no417_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:00 2005
         (614 letters)



>mm_chr14_117315518_117316531
          Length = 1014

 Score = 1164 bits (602), Expect = 0.0
 Identities = 608/610 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatgaaagtaatttacaaaatacattaagctctttcacgatctttctaaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatgaaagtaatttacaaaatacattaagctctttcacgatctttctaaagg 264

                                                                       
Query: 65  aaaagccaaatagttttaaatatattgcaaggtcattatcatttttgtcttagatctgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaagccaaatagttttaaatatattgcaaggtcattatcatttttgtcttagatctgac 324

                                                                       
Query: 125 ttttcattagttactttgtgaactatgtgttgcacgcatatctaaatttgcttaggcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttcattagttactttgtgaactatgtgttgcacgcatatctaaatttgcttaggcttt 384

                                                                       
Query: 185 acgtgacacaaactgatttttatgtgtgccttggagaatcacattccaatgatggcttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acgtgacacaaactgatttttatgtgtgccttggagaatcacattccaatgatggcttca 444

                                                                       
Query: 245 ttgtttaaaataaagatgaaattccagtttttaaattactgcagtaaaatgttcttttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgtttaaaataaagatgaaattccagtttttaaattactgcagtaaaatgttcttttct 504

                                                                       
Query: 305 tttcttcttcctctcaaatttgtataagccaacgttgctccatggagactgtaacatgat 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tttcttcttcctctcaaatttgtataagccgacgttgctccatggagactgtaacatgat 564

                                                                       
Query: 365 ccttcatcttttgaatttttgtatcaaatcaccattttaaactcctgagagcaggagaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttcatcttttgaatttttgtatcaaatcaccattttaaactcctgagagcaggagaag 624

                                                                       
Query: 425 ccaggcaagcccggtacacttttaaaataaggtcgttcgaccctctttggagttgaaaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccaggcaagcccggtacacttttaaaataaggtcgttcgaccctctttggagttgaaaac 684

                                                                       
Query: 485 tcagttatcaacttaaattaaggtggaagtcagagcagatttgctgtctctctaagcagt 544
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 685 tcagttatcaacttaaattaaggtggaagtcagagcagatttggtgtctctctaagcagt 744

                                                                       
Query: 545 gcacacttacactgctgttcattaccaagaacatgccggtacatgtttgtttcccaggaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcacacttacactgctgttcattaccaagaacatgccggtacatgtttgtttcccaggaa 804

                     
Query: 605 aaataaagcc 614
           ||||||||||
Sbjct: 805 aaataaagcc 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no417_d02.g1 MSMg01no417_d02.g1 CHROMAT_FILE:
MSMg01no417_d02.g1 PHD_FILE: MSMg01no417_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:00 2005
         (577 letters)



>mm_chr14_117471615_117472591
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgatcaaggaatggagggggaaacagtgagattcaaagatggaaggcttgggttctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agtgatcaaggaatggagggggaaacagtgagattcaaagatggaaggcttgggttctaa 827

                                                                       
Query: 61  gacagcttctgcagtttattagctgtctttggacaacacttaacttctcctaatcgagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 gacagcttctgcagtttattagctgtctttggacaacacttaacttctcctaatcgagtg 767

                                                                       
Query: 121 ttgtcttctatgacaggaagcctctatgtatctctcccagttttttctcaaagtccaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ttgtcttctatgacaggaagcctctatgtatctctcccagttttttctcaaagtccaatg 707

                                                                       
Query: 181 aaatgtattcaaagtccagtaaatatttaaacacttgccaacaaaagtgtttacacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aaatgtattcaaagtccagtaaatatttaaacacttgccaacaaaagtgtttacacagca 647

                                                                       
Query: 241 aaacttcaccatctccattacttatggcgcagtgcattgtgcaatcataggagaaggttg 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 646 aaacttcaccatctccattacttatggcacagtgcattgtgcaatcataggagaaggttg 587

                                                                       
Query: 301 cccattcatctagagatagattacattttcactgattctttcgtccacaactactgtaag 360
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 586 cccattcatctagagatagattacatttttactgattctttcatccacaactactgtaag 527

                                                                       
Query: 361 acaaagtatttagcttttgaagtagttgctcagtaataatagaattgttaaagctaatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acaaagtatttagcttttgaagtagttgctcagtaataatagaattgttaaagctaatgg 467

                                                                       
Query: 421 ttgaaaactattagaaatgcataaggcaaataacaaagccaaactaaaagctagaaaatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttgaaaactattagaaatgcataaggcaaataacaaagccaaactaaaagctagaaaatc 407

                                                                       
Query: 481 cattgaatttctcaacaacttcccacaacattaaatcagtagggaaactcacttaaacct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cattgaatttctcaacaacttcccacaacattaaatcagtagggaaactcacttaaacct 347

                                                
Query: 541 gctatcttgtaggaaagcacaattcgtgttgataagc 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 346 gctatcttgtaggaaagcacaattcgtgttgataagc 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)