BAC Information

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BAC

Clone NameMSMg01-417N12
Chromosome14 (Build37)
Map Location 77,122,320 - 77,316,813
singlet/doubletdoublet
Overlap geneLOC100043753
Upstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
Downstream geneLOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678, Gm1587, Dnajc15, Epsti1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417N12.T7 (MSMg01no417_n12.b1)MSMg01-417N12.TJ (MSMg01no417_n12.g1)
ACCAG513328AG513329
length775776
length of high quality
(start - end)		504 (69 - 572)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no417_n12.b1 PHD_FILE: MSMg01no417_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:51 2005CHROMAT_FILE: MSMg01no417_n12.g1 PHD_FILE: MSMg01no417_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,122,320 - 77,122,823)(77,316,576 - 77,316,813)
sequence
NTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGATATGCAGTGGTAAACAAGGGATTTTGTTCAACAAAGGGA
GCGTATCTGGATATCGGGTCATTGCCCAACAAACTCATAAACTCAGTGAG
GGAGATGGATGAGAAGGCACTGGGAGACAGCACGATGTCTCATGTGTCTG
GCTTCCCAGGGAGACAAGAATGTATGCCTAGGAGGATTGACAGGGACCTC
CTCAAACTCCAGTCTGTCCAAAGGTGTCAGACATCAATAGCCGCGGCCAT
CATGGCCACGTGAGAACACAGGTTTGCCCAGAAATATCAAATTTGTACAT
ATAAACCAAATCTCTCTTAATCTTGAAATGATGAGTACTAGGTAGAAATG
TTTAAAAATTATGCAAGCCAATGAGAATAATGTAAACCTTCCATCTAGCA
CACAGAAGGCAGCACAGAAGGCAGGTTCAAACCCTGTCTCTGCTTCTACC
AACTGTGGCTGTGGTCCTCAGGTTGAACCATACAAGGCCCAAACTTCCAT
ACTAATGTGGCTATAACTTCAGCCTTCCAAGGGGTGTGGTGCAGACTCAG
AAATGCCCTTTATACAACAGACAGTGGCCATAGAGAAGCTAAATTTTGCT
ATTAGTTATTTTCTATCCGGAAAAATCTTAATACCAACCAGGTTCTTTGC
GGGGGATTTGGGGAATTCCCCTTTTTCCTTGAACCCCCCACCACTTTTGG
AAAAAGGCCCCTGGCTCTTTATATA

NNNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAAAGTGAGCTTAACTGATGGGA
CAATTTCTTTTAGATAAGGTCTACAATGTAAAACAACTATGTTGCTCATG
TGAATTAGTGTTGTGGTGGTTTTTGTTTTGTATTTAATTTACTGGTCAGT
GTTTTCTAATCAGTGAGTTAATGTGGGCTTCCTTATCTCAATCAGTACTG
CCCATTTGTTAGGTCAATAGAGGAGGCATGGACTGCATTCCCAAGGGATG
GTCCCAACTAAAATTTTTTTTTTTGGATCCGGATGGACTGCTGCTAGGNG
TTTTCTCTTGCCTCCTGTTTGATGATAAATATCTGAGACAACTCCAGACG
AAGCTTTATTTTTGGCTCACAGATTCTGAGGCTTTGGTGTATGATTTGAC
AGATTCATTGTTTTCGCCCCCATGATTCCATGTGTACACCACACATTGTG
TAAAGGTATCGCTTTCCATCGTCCCGTATGCATTTAAACACCAATGCTCT
TCTCTTTCAATCTCCCCTCCGTTGAATTTCCCCCCATTGCCCCCTTTTTT
CTCTCCAATTTTTCCCCCCTCAATGTTTTCCCCCTTTTTTCTTCATTATT
CCCCCCTCTTCTCTTTCTTCCCTCTTTTTTTCACTTTCTTCCTCACCTTC
TTCTTGCCCTTTTTATATCCTCCCTTATACCTTTTTTCCCCCCCCCTTTT
TTTTCTTTCTCCCCGCTTTATTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_n12.b1 MSMg01no417_n12.b1 CHROMAT_FILE:
MSMg01no417_n12.b1 PHD_FILE: MSMg01no417_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:51 2005
         (504 letters)



>mm_chr14_77122120_77123023
          Length = 904

 Score =  944 bits (488), Expect = 0.0
 Identities = 500/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtaaacaagggattttgttcaacaaagggagcgtatctggatatcgggtcattgccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtaaacaagggattttgttcaacaaagggagcgtatctggatatcgggtcattgccca 260

                                                                       
Query: 61  acaaactcataaactcagtgagggagatggatgagaaggcactgggagacagcacgatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaactcataaactcagtgagggagatggatgagaaggcactgggagacagcacgatgt 320

                                                                       
Query: 121 ctcatgtgtctggcttcccagggagacaagaatgtatgcctaggaggattgacagggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcatgtgtctggcttcccagggagacaagaatgtatgcctaggaggattgacagggacc 380

                                                                       
Query: 181 tcctcaaactccagtctgtccaaaggtgtcagacatcaatagccgcggccatcatggcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctcaaactccagtctgtccaaaggtgtcagacatcaatagccgcggccatcatggcca 440

                                                                       
Query: 241 cgtgagaacacaggtttgcccagaaatatcaaatttgtacatataaaccaaatctctctt 300
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtgagaacacaggggtgcccagaaatatcaaatttgtacatataaaccaaatctctctt 500

                                                                       
Query: 301 aatcttgaaatgatgagtactaggtagaaatgtttaaaaattatgcaagccaatgagaat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 aatcttgaaatgatgagtactaggtagaaatgtttaaaaattctgcaagccaatgagaat 560

                                                                       
Query: 361 aatgtaaaccttccatctagcacacagaaggcagcacagaaggcaggttcaaaccctgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtaaaccttccatctagcacacagaaggcagcacagaaggcaggttcaaaccctgtc 620

                                                                       
Query: 421 tctgcttctaccaactgtggctgtggtcctcaggttgaaccatacaaggcccaaacttcc 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctgcttctaccaactgcggctgtggtcctcaggttgaaccatacaaggcccaaacttcc 680

                                   
Query: 481 atactaatgtggctataacttcag 504
           ||||||||||||||||||||||||
Sbjct: 681 atactaatgtggctataacttcag 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_n12.g1 MSMg01no417_n12.g1 CHROMAT_FILE:
MSMg01no417_n12.g1 PHD_FILE: MSMg01no417_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:51 2005
         (241 letters)



>mm_chr14_77316376_77317016
          Length = 641

 Score =  414 bits (214), Expect = e-120
 Identities = 232/238 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaaagtgagcttaactgatgggacaatttcttttagataaggtctacaatgtaaaaca 60
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 438 ataaaagtgagcttaattgatgggaaaatttcttttagataaggtctacaatgtaaaaca 379

                                                                       
Query: 61  actatgttgctcatgtgaattagtgttgtggtggtttttgttttgtatttaatttactgg 120
           ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 378 actatgttgctcatgggaattagagttgtggtggttgttgttttgtatttaatttactgg 319

                                                                       
Query: 121 tcagtgttttctaatcagtgagttaatgtgggcttccttatctcaatcagtactgcccat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 318 tcagtgttttctaatcagtgagttaatgtgggcctccttatctcaatcagtactgcccat 259

                                                                     
Query: 181 ttgttaggtcaatagaggaggcatggactgcattcccaagggatggtcccaactaaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttgttaggtcaatagaggaggcatggactgcattcccaagggatggtcccaactaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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