BAC Information

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BAC

Clone NameMSMg01-418G24
Chromosome14 (Build37)
Map Location 88,278,320 - 88,404,970
singlet/doubletdoublet
Overlap genenone
Upstream geneDiap3, EG665324, Tdrd3
Downstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418G24.T7 (MSMg01no418_g24.b1)MSMg01-418G24.TJ (MSMg01no418_g24.g1)
ACCAG513774AG513775
length767769
length of high quality
(start - end)		611 (44 - 654)514 (77 - 590)
definitionCHROMAT_FILE: MSMg01no418_g24.b1 PHD_FILE: MSMg01no418_g24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:38 2005CHROMAT_FILE: MSMg01no418_g24.g1 PHD_FILE: MSMg01no418_g24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,404,365 - 88,404,970)(88,278,320 - 88,278,833)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTAGAAAAATTAAGCTTATTAAATGAACACAAATTCTAAAATTATT
ATTATGTATAATGTATATTTGAATGTGCTAAAATATCCTGTACATCTTAC
AGTTGCTTCTATAAATACTTCATTAAAAATTTTGGAGATATTTTGGTTCT
TATTAAAGACCATGTCCATAGCAATTTTAAGGCAGAAAAAAATTTGGCCC
ACTCACTTTGGATCCATGTGACCTGTGCATGTCCCTCAATCTCTCATTTT
CAGTTTCTTGTTTCAGCATCCTATCATATGCACTGAATTTTCAGGTTCTG
GAGCACCATTGACACCAGAATTATGATAAGACTGTGTCAGCATGTCTCCA
CACAGAAAAAAAAAAAAGGAAAGAAAGAAATAATATGTATGGGATATAAG
AATCATGGGTTCTGTGATTCTTCAAATGGAGTAGAAATCAGTCTGGAAAG
CTCTTAGCTGCTCTGTTTGCTGGACTGACAAATGTAATAGATGCCCACTG
GTGGCATCATGCTGATGCTTCCTGCCAATCCCCATCCATGAATGGAAAAC
TTTGGAGAGGCAGAGATAGTGTCAGGTGCTCCACACAGTGCCCAGTTTCT
AGTGGTAACATAAGCTTTGGAAAGACAAGCTAAATTTGAAGTCCCTATAA
ACAGTCCAGGATATTCAGAACAGGCATTAACCCCACAGACATTTTTACAC
CCCTTAAAATTGCCTAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAACTTGGAAGAGTTCAAGCGCA
CTGTATATTTCTAGTGCTCATTCTGAACTTGGAAATGATGGGAGGCTTAG
AATTATTTTATCATATTCAAAGTGAAGCACTTTTGAATCTTTCTAGATTG
ATATGGGAATTTATTACTTTTTATCATGGAAGGCTTCAGTCTGTGAGGGC
CACCTTGACAAAACTAAGTGCCCTTTCTCTTTAAATAGAATCCCAGATAG
AATTGGCAGTGCTTCATTGAAAATGAATTCAAAGTGTATATGTAATGCAT
ATGGTCTACATTTACATTGCATATTCTTTCTTAGGCAGACAGCACTAGCA
TATGTAATGGTATTACAGCAATAAAGTACTTGTGTTTAGCATAAAAGCAT
ACATTTATGGAATACTACTTTGGGAGAATAACTGTTTTGCTTTGATAAAT
ATTAATTCATTTTACTTACCCAATAACCTCTTTAGGTAGATGCTGTTATT
ACTTTATTTCTTTTATAAATGGTAAAATTAAGGCAAAAAAGTTAAGGGTG
CCCACATTACAGAGTATTCATATGCTAGAAGCCAGGAAGGAACACTTAGA
TCTGTTTTTTTTTTAATTAGGTATTTTCCTCATTTAAATTCTCAATGCTA
TCCCAAAAGTCCGCCATGTCCGGCCCCAATCCTCTTACCAACCAATTCCC
CTTTTTGGGCCTTGGAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_g24.b1 MSMg01no418_g24.b1 CHROMAT_FILE:
MSMg01no418_g24.b1 PHD_FILE: MSMg01no418_g24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:38 2005
         (611 letters)



>mm_chr14_88404160_88405170
          Length = 1011

 Score = 1164 bits (602), Expect = 0.0
 Identities = 605/606 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctagaaaaattaagcttattaaatgaacacaaattctaaaattattattatgta 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggaattctagaaaaataaagcttattaaatgaacacaaattctaaaattattattatgta 752

                                                                       
Query: 66  taatgtatatttgaatgtgctaaaatatcctgtacatcttacagttgcttctataaatac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 taatgtatatttgaatgtgctaaaatatcctgtacatcttacagttgcttctataaatac 692

                                                                       
Query: 126 ttcattaaaaattttggagatattttggttcttattaaagaccatgtccatagcaatttt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttcattaaaaattttggagatattttggttcttattaaagaccatgtccatagcaatttt 632

                                                                       
Query: 186 aaggcagaaaaaaatttggcccactcactttggatccatgtgacctgtgcatgtccctca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaggcagaaaaaaatttggcccactcactttggatccatgtgacctgtgcatgtccctca 572

                                                                       
Query: 246 atctctcattttcagtttcttgtttcagcatcctatcatatgcactgaattttcaggttc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atctctcattttcagtttcttgtttcagcatcctatcatatgcactgaattttcaggttc 512

                                                                       
Query: 306 tggagcaccattgacaccagaattatgataagactgtgtcagcatgtctccacacagaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tggagcaccattgacaccagaattatgataagactgtgtcagcatgtctccacacagaaa 452

                                                                       
Query: 366 aaaaaaaaaggaaagaaagaaataatatgtatgggatataagaatcatgggttctgtgat 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aaaaaaaaaggaaagaaagaaataatatgtatgggatataagaatcatgggttctgtgat 392

                                                                       
Query: 426 tcttcaaatggagtagaaatcagtctggaaagctcttagctgctctgtttgctggactga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcttcaaatggagtagaaatcagtctggaaagctcttagctgctctgtttgctggactga 332

                                                                       
Query: 486 caaatgtaatagatgcccactggtggcatcatgctgatgcttcctgccaatccccatcca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaatgtaatagatgcccactggtggcatcatgctgatgcttcctgccaatccccatcca 272

                                                                       
Query: 546 tgaatggaaaactttggagaggcagagatagtgtcaggtgctccacacagtgcccagttt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaatggaaaactttggagaggcagagatagtgtcaggtgctccacacagtgcccagttt 212

                 
Query: 606 ctagtg 611
           ||||||
Sbjct: 211 ctagtg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_g24.g1 MSMg01no418_g24.g1 CHROMAT_FILE:
MSMg01no418_g24.g1 PHD_FILE: MSMg01no418_g24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:38 2005
         (514 letters)



>mm_chr14_88278120_88279033
          Length = 914

 Score =  986 bits (510), Expect = 0.0
 Identities = 513/514 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaacttggaagagttcaagcgcactgtatatttctagtgctcattctgaacttggaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacttggaagagttcaagcgcactgtatatttctagtgctcattctgaacttggaaat 260

                                                                       
Query: 61  gatgggaggcttagaattattttatcatattcaaagtgaagcacttttgaatctttctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgggaggcttagaattattttatcatattcaaagtgaagcacttttgaatctttctag 320

                                                                       
Query: 121 attgatatgggaatttattactttttatcatggaaggcttcagtctgtgagggccacctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgatatgggaatttattactttttatcatggaaggcttcagtctgtgagggccacctt 380

                                                                       
Query: 181 gacaaaactaagtgccctttctctttaaatagaatcccagatagaattggcagtgcttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacaaaactaagtgccctttctctttaaatagaatcccagatagaattggcagtgcttca 440

                                                                       
Query: 241 ttgaaaatgaattcaaagtgtatatgtaatgcatatggtctacatttacattgcatattc 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttgaaaatgaattcaaagtgtatatgtaatgtatatggtctacatttacattgcatattc 500

                                                                       
Query: 301 tttcttaggcagacagcactagcatatgtaatggtattacagcaataaagtacttgtgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttcttaggcagacagcactagcatatgtaatggtattacagcaataaagtacttgtgtt 560

                                                                       
Query: 361 tagcataaaagcatacatttatggaatactactttgggagaataactgttttgctttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagcataaaagcatacatttatggaatactactttgggagaataactgttttgctttgat 620

                                                                       
Query: 421 aaatattaattcattttacttacccaataacctctttaggtagatgctgttattacttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatattaattcattttacttacccaataacctctttaggtagatgctgttattacttta 680

                                             
Query: 481 tttcttttataaatggtaaaattaaggcaaaaaa 514
           ||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcttttataaatggtaaaattaaggcaaaaaa 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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