BAC Information

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BAC

Clone NameMSMg01-418J08
Chromosome14 (Build37)
Map Location 61,701,079 - 61,892,134
singlet/doubletdoublet
Overlap geneSacs, Sgcg
Upstream geneAtp8a2, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19
Downstream geneArl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418J08.T7 (MSMg01no418_j08.b1)MSMg01-418J08.TJ (MSMg01no418_j08.g1)
ACCAG513884AG513885
length733721
length of high quality
(start - end)
578 (53 - 630)564 (74 - 637)
definitionCHROMAT_FILE: MSMg01no418_j08.b1 PHD_FILE: MSMg01no418_j08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:49 2005CHROMAT_FILE: MSMg01no418_j08.g1 PHD_FILE: MSMg01no418_j08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(61,891,565 - 61,892,134)(61,701,079 - 61,701,641)
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCGTTAATTTACCAGGCATCATTTAGATCTCAACCATGCC
AGGCTGTCCCACAGGGGTTGAAGTCCTGTACTGTGGGGTAAGTGTGGCAG
ATACAGTTCCACTGAAACAAAAAAGGTAAACATAATTTTGTTGCTTTTTC
TGGAATTGTGTTGTAGAATGTGAACTGACTAGACATGGTAACGTTGGCAT
AGCGATGTTAACAGCCTGCGATCTGAGATGGGTGCAAACGCTGTATCCTA
AAATGTCCATTTTCTTAGCTCCTCCTGTAGCTGAATTTATGAAGTGTGTA
CCCAACAGGACATGTCTTAGTGGTGGTATGTTTTCTCTTCCAGTATCCCT
GGTTTGAGGTACTTTCAAGCGTCACTTTCCTGGATGTGACACTTAATTAG
GAAATGAAGTCACTGCATTCCAACTTGTGCTTTGTAATGTTATTCTGTTG
TGCATGAGGGAAATGTCCCACTGAAGTAGGAGACAGAGGGAAAGCAGGCA
AATCAACTCAGTGCTTCTCAACTGCTTACGGCCTTAGGTCCCCTTTCAGA
TCTGTGGCGCTCATAGATTTGCTATAAGCTCCTGAAAAGAAAAAGCCACC
ACACCTGGCTGAGGCCCCTTTCTAAGATTAATATTCACTTACTGTAATCA
GTGACCCTGAAAGAAAAAAATAGCAAAAATGAA
NCGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTTTCCCCCTGTTTAGTTGTAGGA
GTTTATTTTAAATAACCTATAGATGATTAAAGGGAAATTCATGATAAAAA
CAGCAGACACTTGAGGAAAGATGTGGGAGTGGACTCTGCACACACACTAA
ACTAACAATGCCTCTAAAACTAACGATTATTGCAAGATAAAAAGTCTTCA
CATTAAAATTTTTCCTTTTTTTGTCTTTGCCTCATTTTTTTTTTACACAA
TTACAAAAGAAAAAGTTTATTCCCTAAAATCTTGATTATTTTCCCTTTTT
GTTTTGTCTTTGTTTTTCTTGGCCCAAATGCTCATTTTCCTCTAAATTTA
TTGACCTGTGGAAGGTTTTATACAATAAAATCTTTCAAATGAAAGACCCG
GGTTTCCAAAGAAAAAGATGGATCCCTTAAAAGGTACAAAGAATGGTCAG
CGCAAAGCATGATGGGAAAATGGTTTCAGTCGCTGATTATTTCACTATCT
TTAGACTCATTCGCCCTTTATCCCTCCTCAGCCTCAAGCTACAGGATCTT
TAAGATCAAGAAGAAGACTTANATATTTTAAAATAATTAAAATCAAGTCA
GGAACCTAGTCAGGAAAAACTTTTCCATCATGCTTTTCTGTGATTAGGTG
TCTGAAACAAAACAGTGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_j08.b1 MSMg01no418_j08.b1 CHROMAT_FILE:
MSMg01no418_j08.b1 PHD_FILE: MSMg01no418_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:49 2005
         (578 letters)



>mm_chr14_61891362_61892334
          Length = 973

 Score = 1038 bits (537), Expect = 0.0
 Identities = 564/575 (98%), Gaps = 5/575 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgttaatttaccaggcatcatttagatctcaaccatgccaggctgtcccacagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaattcgttaatttaccaggcatcatttagatctcaaccatgccaggctgtcccacagg 714

                                                                       
Query: 64  ggttgaagtcctgtactgtggggtaagtgtggcagatacagttccactgaaacaaaaaag 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 713 ggttgaagtcctgtactgtggggtaagtatggcagatacagttccactgaaacaaaaaag 654

                                                                       
Query: 124 gtaaacataattttgttgctttttctggaattgtgttgtagaatgtgaactgactagaca 183
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtaaac---attttgttgctttttctggaattgtgttgtagaatgtgaactgactagaca 597

                                                                       
Query: 184 tggtaacgttggcatagcgatgttaacagcctgcgatctgagatgggtgcaaacgctgta 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tggtaacgttggcatagcgatgttaacagcctgcgatctgagatgggtgcaaacgctgta 537

                                                                       
Query: 244 tcctaaaatgtccattttcttagctcctcctgtagctgaatttatgaagtgtgtacccaa 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 536 tcctaaaatgtccattttcttagctcctcctgtagctgaatttatggagtgtgtacccaa 477

                                                                       
Query: 304 caggacatgtcttagtggtggtatgttttctcttccagtatccctggtttgaggtacttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 caggacatgtcttagtggtggtatgttttctcttccagtatccctggtttgaggtacttt 417

                                                                       
Query: 364 caagcgtcactttcctggatgtgacacttaattaggaaatgaagtcactgcattccaact 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caagtgtcactttcctggatgtgacacttaattaggaaatgaagtcactgcattccaact 357

                                                                       
Query: 424 tgtgctttgtaatgttattctgttgtgcatgagggaaatgtcccactgaagtaggagaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 356 tgtgctttgtaatgttattctgttgtgcatgagggaaatgtcccactgaagtaggagac- 298

                                                                       
Query: 484 gagggaaagcaggcaaatcaactcagtgcttctcaactgcttacggccttaggtcccctt 543
            ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 297 -agggaaagcaggcaaatcaactcagtgcttctcaactgcttacagccataggtcccctt 239

                                              
Query: 544 tcagatctgtggcgctcatagatttgctataagct 578
           ||| |||||||||||||||||||||||||||||||
Sbjct: 238 tcaaatctgtggcgctcatagatttgctataagct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 973
Length adjustment: 10
Effective length of query: 568
Effective length of database: 963
Effective search space:   546984
Effective search space used:   546984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no418_j08.g1 MSMg01no418_j08.g1 CHROMAT_FILE:
MSMg01no418_j08.g1 PHD_FILE: MSMg01no418_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:49 2005
         (564 letters)



>mm_chr14_61700878_61701841
          Length = 964

 Score = 1015 bits (525), Expect = 0.0
 Identities = 554/564 (98%), Gaps = 2/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttttttccccctgtttagttgtaggagtttattttaaataacctatagatgattaaaggg 61
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 202 ttttttccccctgtttagttgtaggagtttattttaaataacctacagatgattaaaggg 261

                                                                       
Query: 62  aaattcatgataaaaacagcagacacttgaggaaagatgtgggagtggactctgcacaca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaattcatgataaaaacagcagacacttgaggaaagatgtgggagtggactctgcacaca 321

                                                                       
Query: 122 cactaaactaacaatgcctctaaaactaacgattattgcaagataaaaagtcttcacatt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cactaaactaacaatgcctctaaaactaacgattattgcaagataaaaagtcttcacatt 381

                                                                       
Query: 182 aaaatttttcc-tttttttgtctttgcctcattttttttttacacaattacaaaagaaaa 240
           |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 aaaaattttccgtttttttgtctttgcctcattttttttt-acacaattacaaaagaaaa 440

                                                                       
Query: 241 agtttattccctaaaatcttgattattttccctttttgttttgtctttgtttttcttggc 300
           |||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaaaagccctaaaatcttgattattttccctttttgttttgtctttgtttttcttggc 500

                                                                       
Query: 301 ccaaatgctcattttcctctaaatttattgacctgtggaaggttttatacaataaaatct 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaaacgctcattttcctctaaatttattgacctgtggaaggttttatacaataaaatct 560

                                                                       
Query: 361 ttcaaatgaaagacccgggtttccaaagaaaaagatggatcccttaaaaggtacaaagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaatgaaagacccgggtttccaaagaaaaagatggatcccttaaaaggtacaaagaa 620

                                                                       
Query: 421 tggtcagcgcaaagcatgatgggaaaatggtttcagtcgctgattatttcactatcttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtcagcgcaaagcatgatgggaaaatggtttcagtcgctgattatttcactatcttta 680

                                                                       
Query: 481 gactcattcgccctttatccctcctcagcctcaagctacaggatctttaagatcaagaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gactcattcgccctttatccctcctcagcctcaagctacaggatctttaagatcaagaag 740

                                   
Query: 541 aagacttanatattttaaaataat 564
           |||||||| |||||||||||||||
Sbjct: 741 aagacttaaatattttaaaataat 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)