BAC Information

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BAC

Clone NameMSMg01-418M16
Chromosome14 (Build37)
Map Location 15,721,721 - 15,721,887
singlet/doubletsinglet
Overlap geneNek10
Upstream geneGm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152, LOC100042147, Slc4a7
Downstream geneLrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418M16.T7 (MSMg01no418_m16.b1)MSMg01-418M16.TJ (MSMg01no418_m16.g1)
ACCAG514044AG514045
length759819
length of high quality
(start - end)
488 (71 - 558)167 (70 - 236)
definitionCHROMAT_FILE: MSMg01no418_m16.b1 PHD_FILE: MSMg01no418_m16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:05 2005CHROMAT_FILE: MSMg01no418_m16.g1 PHD_FILE: MSMg01no418_m16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCCAGTTTTTTCCTTGATACCGAATTCCTTACAGAATGAAATAAA
ATTTTTACTAGAGTAGGATGGCCCGTTATCTGTCTTAATTAGTTTAGGCA
ATCCCATGGCATTAAAGGCTTGCAGGCAATGATCAATTATGTTTTTAGAA
GCCTCTCCTGTATGCAGAGAGGCAAAAAGAAATCCTGAACAATTATTGAT
ACAAACATGTATATATTTTAGTTTTCCAAATTCTGCATAATGGGTTATAT
CCATTTGCCAAATATGATTAGGTATTTTTGCCTCTAGGATTGACTCCTAA
ATGTGGCACTGGAGATAATGTAATACATTTAGGACATTCTTTTACAATCA
TTCTTGCTTGCTCCTTAGTGATCTTATGTCAGAGCCTTAGGGTATGCCTA
GAGAGATGAAACCTTTCATGATCATGTTTGGCCAAAGCAACAGAATCTGA
AATTAAGGCTTCTCCTATTAGAGCTCTGTCAATGCAATCATTGTCTTCAG
CTAAAGGTCCAGGAAGACCAGAGTGAGATCATATGTGGCCTATATAAAAC
GAATTTTTCCGGGCGAGAACGATGTTTTGCAATTCCGAAAATAACGATCC
TGATGGCCTGCTTGAACTTAAATGCGGCACAGGTCTCCAATAATGCCACC
GATTGTGCTACATATCAACCGTTCACCAATGATCCTATTACCCTTATTTA
CTTACTGAG
CGATGATGTGTGAGGCCTGGCGGCCGCCTGGTTCATGAGTTGAGGTGACC
TATAGAAGGTTTCAGAAATTCCTTGCCACTGGCCTTGAAGACAGAGGGAG
CAGGAGGAGGGAACAGGGTTCGGACAGCTGTGTGTATGATGGAAAGACTT
CTGGAGACAGTTTCAGTGAGATGACTCTACTTTAGTGTTTCAGGGGGTGG
GTATGTAAGGGTTACGGGTGGAATGGACTGTTTGTTCATAGTACAGTTTT
TTTTTATCATATGTGCTGGATAGTTTGATTGTTCTAACTTTTCTCTTGAT
TGCCACACAGGCCGATTTGCTGATTTGGAAGGAAACGACCGGATCATGAA
CCCCGGTTTTTTTTCTCCCCCCCGGTCTTGCTTGCTGTTACTTGTCCTGT
ATCTTGTTCTTATTTCACCCCTCCCTTTATTTTTGTTCTTATTCTTATTG
TCTTTTTTCCTTTCGCTTCTTCTTCTTCTTTCTTATTTTTCTATTCTATA
TCTTATTTTTCCCAATTTTATTTTTATTTCCTCTGCCTCCTCTCATCTCA
CTTGTTTCTCACTTCCTTCTTCTTTCTTATTCCGTTTTTTATTCTCCTTC
ATTCTCTTTCTTTTTTTTCTTTTATCGATTACTCTTTCTATTTTTCACTC
TTCTATCATTCTCTTTTTCTCTTTTTCTCCTCACCTTTTTCTCTGTCCTT
ACGTTTTTTTTTTTTTTTATTTCCCCTTCTTTCTTTACACACGATCTATT
TTTTTGTGTTTAATATTTCTTGTCATCTCGTATTTGTTCACTGCTACCAT
TTCTCTAATCTTCCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_m16.g1 MSMg01no418_m16.g1 CHROMAT_FILE:
MSMg01no418_m16.g1 PHD_FILE: MSMg01no418_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:05 2005
         (167 letters)



>mm_chr14_15721521_15722087
          Length = 567

 Score =  292 bits (151), Expect = 7e-84
 Identities = 163/167 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttgccactggccttgaagacagagggagcaggaggagggaacagggttcggacagct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tccttgccactgaccttgaagacagagggagcaggaggagggaacagggtttggacagct 260

                                                                       
Query: 61  gtgtgtatgatggaaagacttctggagacagtttcagtgagatgactctactttagtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgtatgatggaaagacttctggagacagtttcagtgagatgactctactttagtgtt 320

                                                          
Query: 121 tcagggggtgggtatgtaagggttacgggtggaatggactgtttgtt 167
           |||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tcagggggagggtatgtaagggttatgggtggaatggactgtttgtt 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)