Query= MSMg01no419_i17.b1 MSMg01no419_i17.b1 CHROMAT_FILE:
MSMg01no419_i17.b1 PHD_FILE: MSMg01no419_i17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:07 2005
(323 letters)
>mm_chr14_83303299_83304021
Length = 723
Score = 588 bits (304), Expect = e-172
Identities = 316/320 (98%)
Strand = Plus / Plus
Query: 1 tccccacttctatactattgggttttctaagaaagaccatagagatagactctgacatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccccacttctatactattgggttttctaagaaagaccatagagatagactctgacatga 260
Query: 61 gagcatacctggaatattttgtatattctgtgatgatagataacttatgcatacagcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcatacctggaatattttgtatattctgtgatgatagataacttatgcatacagcatt 320
Query: 121 ctacttaaacactatgtctattttatcatctgatcaaactgtcacactgaaaagctctgt 180
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 321 ctacttaaacactatgtctattttaacaactgatcaaactgtcacactgaaaagctctgt 380
Query: 181 gccattacactgaaattttatattagctctgaacagcgaataaatgtttaaaatggctaa 240
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 gccattacattgaaattttatattagctctgaacagtgaataaatgtttaaaatggctaa 440
Query: 241 ttattgcccaaaaaagaacacatattaaattcaataatggaaaccctctaaagtctatag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattgcccaaaaaagaacacatattaaattcaataatggaaaccctctaaagtctatag 500
Query: 301 aagctggagatatagatttc 320
||||||||||||||||||||
Sbjct: 501 aagctggagatatagatttc 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_i17.g1 MSMg01no419_i17.g1 CHROMAT_FILE:
MSMg01no419_i17.g1 PHD_FILE: MSMg01no419_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:07 2005
(549 letters)
>mm_chr14_83482553_83483501
Length = 949
Score = 988 bits (511), Expect = 0.0
Identities = 546/573 (95%), Gaps = 24/573 (4%)
Strand = Plus / Minus
Query: 1 cctggatagagagcattcaaagaacgacctatctcaggaattaaggtgggaaaaatgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 cctggatagagagcattcaaagaacgacctatctcaggaattaaggtgggaaaaatgaaa 818
Query: 61 agtaatactcagtgtggacctctagctaacatatgacataagagcaagcccaccccgtgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agtaatactcagtgtggacctctagctaacatatgacataagagcaagcccaccccgtgc 758
Query: 121 cacacacatgc------------------------atatatatatatatatatatatata 156
||||||||||| |||||||||||||||||||||||||
Sbjct: 757 cacacacatgcatatatatatatatatatatatatatatatatatatatatatatatata 698
Query: 157 tatgcatcctaaaaacactaaaaacaaaattttttaaaatgagagattcaatgtaggtat 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 697 tatgcatcctaaaaacactaaaaacaaaattttttaaaatgagagattcaatgtagatat 638
Query: 217 atctgatctgagctaatattcagtctgctgacaatctttaatcagagttagtttacttaa 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 atctgatctgagctaatattcagtctgctgacaatctttaatcagagttagtttacttaa 578
Query: 277 tgtaaataaattaatgctataattcaatccattttcttattgtttagtttgcatgaattt 336
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 577 tgtaaataaattaatgctataattcaatccattttctcattgtttagtttgcatgaattt 518
Query: 337 ttttcacaggaaaattatcaacaggagaatctgagtctattcacagaaccccaggacata 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttttcacaggaaaattatcaacaggagaatctgagtctattcacagaaccccaggacata 458
Query: 397 catctctctccttctaacccctgccccccatttgtctgtctcctactccctcatactccc 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catctctctccttctaacccctgccccccatttgtctgtctcctactccctcatactccc 398
Query: 457 aatttgaactttgatggccaagcctaatggtttccagttgtctttgttagggttcctatg 516
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 397 aatttgaactttgatggccaagcctaatggtttccagttgtcttagttagggttcctatg 338
Query: 517 gctgtgctaaaactccatgaccaaggcaactta 549
|||||||||||||||||||||||||||||||||
Sbjct: 337 gctgtgctaaaactccatgaccaaggcaactta 305
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 128 atgcatatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||||||
Sbjct: 691 atgcatatatatatatatatatatatatatat 722
Score = 62.6 bits (32), Expect = 7e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatatgcat 163
||||||||||||||||||||||||||||||||
Sbjct: 719 atatatatatatatatatatatatatatgcat 750
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 697 atatatatatatatatatatatatatat 724
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 699 atatatatatatatatatatatatatat 726
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 701 atatatatatatatatatatatatatat 728
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 703 atatatatatatatatatatatatatat 730
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 705 atatatatatatatatatatatatatat 732
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 707 atatatatatatatatatatatatatat 734
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 709 atatatatatatatatatatatatatat 736
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 711 atatatatatatatatatatatatatat 738
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 713 atatatatatatatatatatatatatat 740
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 715 atatatatatatatatatatatatatat 742
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 132 atatatatatatatatatatatatatat 159
||||||||||||||||||||||||||||
Sbjct: 717 atatatatatatatatatatatatatat 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 14
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
