BAC Information

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BAC

Clone NameMSMg01-420A17
Chromosome14 (Build37)
Map Location 46,311,320 - 46,311,493
singlet/doubletsinglet
Overlap genenone
Upstream geneEG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1
Downstream geneEG637379, LOC666834, LOC100041685, LOC625377, LOC218963, LOC100041724, Bmp4, LOC100041732, LOC100041754
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420A17.T7 (MSMg01no420_a17.b1)MSMg01-420A17.TJ (MSMg01no420_a17.g1)
ACCAG515003AG515004
length804763
length of high quality
(start - end)
473 (134 - 606)177 (72 - 248)
definitionCHROMAT_FILE: MSMg01no420_a17.b1 PHD_FILE: MSMg01no420_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:45 2005CHROMAT_FILE: MSMg01no420_a17.g1 PHD_FILE: MSMg01no420_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTTTTTGTGTGGCCCCGGATTTACNNNNCNNCCCCGGCAGCCATCCCC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAACATGGCNGGAA
NCNCNGNTTATTACGAACTCACAGGTTAAAGGGGATTGTTTGGTTCTCTG
GAATCTAACTTCTTGAGTTCTTTGTTTATATTTGGATATTAGCCCTCTAT
TGGATGTAGAGTTGGTAAAGATATTTTCCCAATCTGTTAGTCGCTGTTTT
GTCCTATTGTTGGTGGGATTGTAAGATGGTACAACCACTCTGGAAATCAG
TTTGGTGGTTCCTCAGAAAATTGGACACAGTGTTACCTGAGGACCCAGCT
ATACCACTCCTGGGCATATTTTCTTTAGATGCTCCAACATTTAGCAAGGA
CACATGTTCCACTATGTTCATAGCAGAAGATGGAAACAACCCAGATGTCC
CTCACTGAGGAATCAATACAGAAAATATAATACATTTACACAATGGAGTA
CTACTCAGCTATTACAAACAATGGATTCATGAATATCTTAGGCAAATGAA
TGTAACTAGAAAATATCATCTTGATTGAGGTAACCATTCACAAAAGAACA
CACATGGTATGTGCTTCACCGGTAAGTAGATATTTAGCCCAGAAATTTGG
AATCCCCAAGCTACAATTCACAGACCACCTGAAGTTCAAAAAGAAGGAAG
ATCAATGTATGATTGTTTCGGTCTTCTTAGAAAGGGGAACAAAATACCCA
CCGGTAGGCAATCTCGAGACCAATTGGGCAGCATAAAATCAACGAAAGGG
CATC
ATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTACATAGACTCATCCTAAGAGTGTGAG
TAGGATTCTGTTTTGGTGCTGGGAACATGGCAGTCACTCTAGACCTCTCA
GGACTCAGTGAGAAGAACTGGGCTCTGGAACATTCGTCGGGGTATCTCCC
CTGTGACCTCTCTCTGGCAGGGCAGGGGTGAGGCTGAGTCCCACANGGAC
ATTGGGGGGGAAAAACCCCCCTTTGGGGGGGGGCCCCCCCCCAGGGGGGG
GTGGGGGGGGCCCCCCCCCCCAAAAAAAAAAAAATTTTTTTTTTCCCCCC
CCCACAGGGGGGGTGGGGTTTTTAATTAACCCCCCCCCCTCCCAACAAAA
GAAAAAAGAGTGTTGTCCCCCCCCCCCCTTCTTTTTTTTTTAGTGAAGGG
GGGGGCCCCCCCCCCCCATAATAAGGGGGGGGGGGTGGGCGGCGGGGGGG
GTTTTATATTTACAAAAATAAATTAAATACCCTTGTTTGTTGGCTGCGTC
CTCTCCCTCCTCCCCTTTCCCTTTCCCCCGTTATCCCATGAGGAACTCGT
GCCTTCTTCTCTCCTTCTTTGTGTTAACATCCATTCATTCCACTATCTCC
CTCCCCTCTTACCCGCTATTCTCTATTTCCTCTCCTCTTTTTTATTGCCG
TCGTTGCCGTTTCTCTGACATTTTGACGTCTTTAATATTGCTCCTCTCCC
TCTTCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_a17.g1 MSMg01no420_a17.g1 CHROMAT_FILE:
MSMg01no420_a17.g1 PHD_FILE: MSMg01no420_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:45 2005
         (177 letters)



>mm_chr14_46311120_46311696
          Length = 577

 Score =  337 bits (174), Expect = 3e-97
 Identities = 174/174 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacatagactcatcctaagagtgtgagtaggattctgttttggtgctgggaacatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtacatagactcatcctaagagtgtgagtaggattctgttttggtgctgggaacatggc 260

                                                                       
Query: 61  agtcactctagacctctcaggactcagtgagaagaactgggctctggaacattcgtcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcactctagacctctcaggactcagtgagaagaactgggctctggaacattcgtcggg 320

                                                                 
Query: 121 gtatctcccctgtgacctctctctggcagggcaggggtgaggctgagtcccaca 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtatctcccctgtgacctctctctggcagggcaggggtgaggctgagtcccaca 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 577
Length adjustment: 8
Effective length of query: 169
Effective length of database: 569
Effective search space:    96161
Effective search space used:    96161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)