Query= MSMg01no420_b11.b1 MSMg01no420_b11.b1 CHROMAT_FILE:
MSMg01no420_b11.b1 PHD_FILE: MSMg01no420_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:49 2005
(274 letters)
>mm_chr14_11400709_11401382
Length = 674
Score = 426 bits (220), Expect = e-123
Identities = 254/276 (92%), Gaps = 21/276 (7%)
Strand = Plus / Plus
Query: 1 tttggggaaacagtatgaggattattggtaaaatttcttgtgaatggcagtttactatct 60
|||| |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 218 tttgtggaaacagtatgaggattattggtaa-----------aatggcagtttacta--t 264
Query: 61 t--ctatgagtttgactatgtacacacacacacacaaacacacacacacacacacacaca 118
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 tgcctatgagtttgactatgtacacacacacac----acacacacacacacacacacaca 320
Query: 119 catatatatatatatatatacttatgaaaaatctatttctgtaaactttttcttaataaa 178
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 c--atatatatatatatatacttatgaaaaatctatttctgtaaactttttcttaataaa 378
Query: 179 taattgaagaagtacacaaaatatacaaagttggttcttgctgtattgtttccaaaaaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taattgaagaagtacacaaaatatacaaagttggttcttgctgtattgtttccaaaaaca 438
Query: 239 cagagggaagcaaattataagtccattaaataaaac 274
||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagagggaagcaaattataagtccattaaataaaac 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no420_b11.g1 MSMg01no420_b11.g1 CHROMAT_FILE:
MSMg01no420_b11.g1 PHD_FILE: MSMg01no420_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:49 2005
(536 letters)
>mm_chr14_11552203_11553139
Length = 937
Score = 953 bits (493), Expect = 0.0
Identities = 526/537 (97%), Gaps = 1/537 (0%)
Strand = Plus / Minus
Query: 1 caccctagactgaatacatcaatatcttttcaaatgc-tgttactgctagcagtgagatg 59
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 737 caccctagactgaatacatcagtatcttttcaaatgcttgttactgctagcagtgagatg 678
Query: 60 gtggggtggtgggcagaactctgttgttgagggctctttataggtgattgcagtgtgagc 119
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 677 gtggggtggtgggcaggactctgttgttaagggctctttataggtgattgcagtgtgagc 618
Query: 120 caatgttgaaagagattgtctaaattgatttcagtagttcagtatctcaggtcaagatac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 caatgttgaaagagattgtctaaattgatttcagtagttcagtatctcaggtcaagatac 558
Query: 180 cagctctatcttgatcaccaactgtgatcaactgcgcacatcagctaaaattctctgcaa 239
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 cagctctatcttgatcaccaactgtgatcaactttgcacatcagctaaaattctctgcaa 498
Query: 240 gttacacagctgaagggtttcaacagactaagagcttgagttctgggctaacacagagca 299
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 497 gttacacagctgaagggtttcaacaggctaagagcttgagttctgggctaacacagagca 438
Query: 300 ttacatgaggttctctggggtagagccctagaatctctttaaggtaattcttggcactga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ttacatgaggttctctggggtagagccctagaatctctttaaggtaattcttggcactga 378
Query: 360 gctttgagaaagtgccaaggaggcaaggcaatcttcagaaggagttctttggagctccag 419
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 377 gctttgagaaagtgccaaggaggcaaggtaaccttcagaaggagttctttggagctccag 318
Query: 420 gttacaggaagtctgtggcaggactccatgctgtgtgtggttttgtcggtctagctttgt 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gttacaggaagtctgtgacaggactccatgctgtgtgtggttttgtcggtctagctttgt 258
Query: 480 tcatctggtctgactattatcacacttataatagcatcagcatgatttgaggcaaag 536
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 257 tcatctggtctgactattatcacacttataatagcatcagcatgatttgaagcaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
