BAC Information

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BAC

Clone NameMSMg01-420P05
Chromosome14 (Build37)
Map Location 28,969,269 - 28,969,766
singlet/doubletsinglet
Overlap geneErc2
Upstream geneLOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P05.T7 (MSMg01no420_p05.b1)MSMg01-420P05.TJ (MSMg01no420_p05.g1)
ACCAG515694AG515695
length714750
length of high quality
(start - end)
---498 (73 - 570)
definitionCHROMAT_FILE: MSMg01no420_p05.b1 PHD_FILE: MSMg01no420_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:56 2005CHROMAT_FILE: MSMg01no420_p05.g1 PHD_FILE: MSMg01no420_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTATCTATTAGTTGCGCCGCTATACGACTATTATTCGAAGAGGATCC
GAGGAATTCTCTGTTCGATTAGATGGGGAGGCTCCCACCCCTGCTGTCAG
GCAGCTGGCTGGGATTGAAGCCTGGCCTCCCCTCCTCAGTCTCTGGTCTG
TCACATCTCAGTATGACCTGATGCTGACTGTCCTTTCTCTGTCACTGCTC
TTCAGGGTGGAAGCAAAGATAACCCCATCTGGAAAAGAGGAAGATGAATT
GGTGCTATACTAAGAAAAGATTTGGGGAAGAAACTAACAAGTACCCAGCA
CTGGATAAATGCTGTTTCTTCTACTGGCTTGGTCCCCACTGCACTGCATC
CCTCTTCCTGTCTGCTTTTCTTTAGGCAGCCTCATGTTCAGATGTCATTT
TGTGGCTTGAAGTAGGCCAGAAACACTGATGTGTGAAAGCATATCTCTAA
GAGTGGAATGATACCCGCTATGCGTGGATATGAAATAAGCTGCCGCGTGA
AATATGCTGTCCCTTCTCCCGGGGTTTATCCTGAGATGCCTAGGCAGTTA
GCGTGCTTGTGTGCGCTTTTCCCCTTATTTTTGCTTCAACTCCCCCCCCC
CCTTTCTTCCCCCTTCCCCTACTGTTCCGAAACCCTCTTTTTTTCCTTTC
CCACTTATTCCCCCCCCCCCCCCCCCTATTATTCCCTTTTTCTCCTCCCC
CCCCCCCCTCCCCG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATATCCAGGTACAAAGAACCAACATGA
ATGTAAAAAGTCTGCTTGGGATCATGGAGATAAGACTCATAGTGGCAGCT
TTAGAAAAGGACTTGGTTAATAGTCAATTTTCCATATCCACATGTAAAGA
AAACTGATCCAGAAAGTAGGGCTCCAGCTCTACTTGGAGGGGGCTATTTG
TCTTAAGGCACAGACAAGGTTAAGAGTCAAGAGTCTTGCAGCAAATGATT
CCTGTTGCAGTTATGGGGCTGGCATTTTGCTACCTTCAGCAAAAATCCCA
AGTGCAGCTTCCCTCCACCAGCACAAGGGCATAAGTTCAACCACTGAGCT
GACAGCTTTCATCAGCCACTTGAATCATATATTTGATTGCGGGTCATACC
TGAAATATGCCTACTTCCCTCCTTCACCTCAACCATTTCTTTTATCTTTC
CAACTCATGTGTTGCTCCTTCCTGCCATTCCAAAAGGGAGTTTCCCATAA
CCCCCATGGAAGCTTCGTACAACCCCCAATGGGAGCCTCATATAGCCCCC
ATGGAAGAATCCTATAAACCCGTGCTTCCTTTCCATCTGGGACAGATACT
CCAAACTTTTCCTGATCAGAGCACTTGGGACACTGGCTAGCAATTAACAG
CTTATATTGCCAACTCTTTCTTCAATCTTGGAGTTTCCCAAGGGAGGGTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p05.g1 MSMg01no420_p05.g1 CHROMAT_FILE:
MSMg01no420_p05.g1 PHD_FILE: MSMg01no420_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:57 2005
         (498 letters)



>mm_chr14_28969069_28969966
          Length = 898

 Score =  870 bits (450), Expect = 0.0
 Identities = 486/498 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatccaggtacaaagaaccaacatgaatgtaaaaagtctgcttgggatcatggagata 60
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 catacccaggtaccaagaaccaacatgaatgtaaaaagtctgcttgggatcatggagata 639

                                                                       
Query: 61  agactcatagtggcagctttagaaaaggacttggttaatagtcaattttccatatccaca 120
           |||| |||||||||||||||| |||||||||||||||||||| || ||||||||||||| 
Sbjct: 638 agacccatagtggcagctttaaaaaaggacttggttaatagtgaactttccatatccact 579

                                                                       
Query: 121 tgtaaagaaaactgatccagaaagtagggctccagctctacttggagggggctatttgtc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtaaagaaaactgattcagaaagtagggctccagctctacttggagggggctatttgtc 519

                                                                       
Query: 181 ttaaggcacagacaaggttaagagtcaagagtcttgcagcaaatgattcctgttgcagtt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ttaaggcacaaacaaggttaagagtcaagagtcttgcagcaaatgattcctgttgcagtt 459

                                                                       
Query: 241 atggggctggcattttgctaccttcagcaaaaatcccaagtgcagcttccctccaccagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atggggctggcattttgctaccttcagcaaaaatcccaagtgcagcttccctccaccagc 399

                                                                       
Query: 301 acaagggcataagttcaaccactgagctgacagctttcatcagccacttgaatcatatat 360
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 398 acaagggcatcagttcaaccactgagctgacagctttcatcagccacttgaattgtatat 339

                                                                       
Query: 361 ttgattgcgggtcatacctgaaatatgcctacttccctccttcacctcaaccatttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ttgattgcgggtcatacctgaaatatgcctacttccctccttcacctcaaccatttcttt 279

                                                                       
Query: 421 tatctttccaactcatgtgttgctccttcctgccattccaaaagggagtttcccataacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tatctttccaactcatgtgttgctccttcctgccattccaaaagggagtttcccataacc 219

                             
Query: 481 cccatggaagcttcgtac 498
           ||||||||||||||||||
Sbjct: 218 cccatggaagcttcgtac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)