BAC Information

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BAC

Clone NameMSMg01-420P13
Chromosome14 (Build37)
Map Location 124,902,313 - 124,902,928
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420P13.T7 (MSMg01no420_p13.b1)MSMg01-420P13.TJ (MSMg01no420_p13.g1)
ACCAG515710AG515711
length695748
length of high quality
(start - end)
---616 (65 - 680)
definitionCHROMAT_FILE: MSMg01no420_p13.b1 PHD_FILE: MSMg01no420_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:58 2005CHROMAT_FILE: MSMg01no420_p13.g1 PHD_FILE: MSMg01no420_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATTATCAAAATTGGGGGGTAAAGAATTTTCTTCGATGCCGGGGGGANCT
TTCTTTCCAACACAGGGNGGNNGGAAAAAAAAAANAACCGGAACNAAAAG
ACGAGACGGGCGAAGAAGGGAGGAAAAGGGGCCCGGGCCACCGCCGGGAA
GAGAGAAGAAGCGACANAGNAAAAAAAAAACCCAGAGGAGAAAACCCCCC
GCCGAAGAAACCCAACCACCCCCCCCGGGGCGAGGGACAAAGAAGGGGGC
CCCCACCAAACAGACCAGCGAGCCGAAGGAGGGGGCCACGAATTTTTTTT
TTTTAGCAAGAAGAGAACCCCCACAAAACGCCGCGGAGGGGGCCCCACAA
ACGCAGCACATGATGACGGCCACCCACCAAAAAACGGAGGTACCTATTAT
TTTATCCTTAATTACTGATGGGCGTCCCATTATCATAATCCGTTGTTTCT
TCTTTATATATGCAGGGCGGTTTTTTATCCTTCCCTATTTACCCCCCGTT
GCCCTCCCGCTGGTCGCCGTTTTACTTATTTAACACACTATTTACCCTTT
TTCTTTCCTTTATTATGCGCGGGGCAATTTCACCTTCCAATAACACAAAT
CCCTCGCTTCCTTCTCTATTCCCCTTTTTTTTTTTTTCCTTTCCAACCAA
TACCTTTTGTATGCGCCTGTTTTCTTGTTTGCCCACCCAAATAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTGTTTAGCTCTCTACCCCATTTTTAATAGGGTTA
TTTAATTTTCTGGGGTCCATCTTATTGAGGGAGAACACTGCTTTCCTTTC
TTTCTCTTTGATATTGGTCAGAGATCGTTGATAGTTTCTTCGTTTTATGT
AATAAGAACAAATTAGTGTTTTTTCTGCTCCATTATTAAAGAACTATTAT
TGTGAATTTATATGATTCTATAGTTCAGACACAAGAAATCTCATTTGTTT
TTATTTTGTTTTCTTATTTCTCTGCACCCTTATATTGTTTTCACAGAAAC
ATGTGTTTGTTTTTTGGGATGACATCCTAGGATACTGCCAATAAAGGGCC
AATCTTCATGGTCTCCTGCATCGGGCACTACTTGGTGACTATCTCTGTAT
CTTTATTTGATAATATCTATGTTCTGTCTAGAAGCAGTTAGGACTACATA
ATCAATGACTGAAAAATGACTTTCTTGTCCAATAAGATATTCAGCTTATT
ACATAAAGCAACACAAAATTCACTAGAGGACTCTAATTTGTGTATACTTA
CTATTTCTGTTATCAAATCTATAACCCACTTTTTCATAAGAGTCTGTAAT
CTGATAGATATAATAATACAGATTGAAGATTTTTATCTAAAGTACTGGTT
CTCCACTCACCCACACACATCTGCATCACCACTTATACACCATTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_p13.g1 MSMg01no420_p13.g1 CHROMAT_FILE:
MSMg01no420_p13.g1 PHD_FILE: MSMg01no420_p13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:58 2005
         (616 letters)



>mm_chr14_124902048_124903063
          Length = 1016

 Score = 1168 bits (604), Expect = 0.0
 Identities = 613/616 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctctaccccatttttaatagggttatttaattttctggggtccatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 881 tttgtttagctctctaccccatttttaatagggttatttaattttctggggtccatcttc 822

                                                                       
Query: 61  ttgagggagaacactgctttcctttctttctctttgatattggtcagagatcgttgatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 ttgagggagaacactgctttcctttctttctctttgatattggtcagagatcgttgatag 762

                                                                       
Query: 121 tttcttcgttttatgtaataagaacaaattagtgttttttctgctccattattaaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tttcttcgttttatgtaataagaacaaattagtgttttttctgctccattattaaagaac 702

                                                                       
Query: 181 tattattgtgaatttatatgattctatagttcagacacaagaaatctcatttgtttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tattattgtgaatttatatgattctatagttcagacacaagaaatctcatttgtttttat 642

                                                                       
Query: 241 tttgttttcttatttctctgcacccttatattgttttcacagaaacatgtgtttgttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tttgttttcttatttctctgcacccttatattgttttcacagaaacatgtgtttgttttt 582

                                                                       
Query: 301 tgggatgacatcctaggatactgccaataaagggccaatcttcatggtctcctgcatcgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tgggatgacatcctaggatactgccaataaagggccaatcttcatggtctcctgcatcgg 522

                                                                       
Query: 361 gcactacttggtgactatctctgtatctttatttgataatatctatgttctgtctagaag 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 521 gcactacttggtgactatctctgtatctttatttgataatatctatgtgctgtctagaag 462

                                                                       
Query: 421 cagttaggactacataatcaatgactgaaaaatgactttcttgtccaataagatattcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cagttaggactacataatcaatgactgaaaaatgactttcttgtccaataagatattcag 402

                                                                       
Query: 481 cttattacataaagcaacacaaaattcactagaggactctaatttgtgtatacttactat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttattacataaagcaacacaaaattcactagaggactctaatttgtgtatacttactat 342

                                                                       
Query: 541 ttctgttatcaaatctataacccactttttcataagagtctgtaatctgatagatataat 600
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttctgttatcaaatctatgacccactttttcataagagtctgtaatctgatagatataat 282

                           
Query: 601 aatacagattgaagat 616
           ||||||||||||||||
Sbjct: 281 aatacagattgaagat 266


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space:   609636
Effective search space used:   609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)