BAC Information

Click to search

BAC

Clone NameMSMg01-421D19
Chromosome14 (Build37)
Map Location 47,994,036 - 48,169,296
singlet/doubletdoublet
Overlap geneLgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
Downstream geneEG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421D19.T7 (MSMg01no421_d19.b1)MSMg01-421D19.TJ (MSMg01no421_d19.g1)
ACCAG515912AG515913
length752760
length of high quality
(start - end)		249 (78 - 326)397 (81 - 477)
definitionCHROMAT_FILE: MSMg01no421_d19.b1 PHD_FILE: MSMg01no421_d19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:20 2005CHROMAT_FILE: MSMg01no421_d19.g1 PHD_FILE: MSMg01no421_d19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,169,049 - 48,169,296)(47,994,036 - 47,994,431)
sequence
AACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGC
GGAATTCAAGGCCAGCTTTCGTGTTACAGCAAATTCCAGGCCAGCCTGGC
ATGCACGAGCCCCTGTCTTACAGACTGACGATTTTATTGTGTTTTATTTT
GCTCTGGGATTCAGTATGAGGATTGGATCTAGGCCTCCCAATTTTTATCA
TTGCATTTTCCTAAGTAGGTAATTTGGGTGAAACTTTAAAAGTCTTGCAA
CTTTTTCATAAGGTTGACATTTTTATACCAAGAAAACATGTGCCTATCTA
GTTGTGTAGCAAATAGTGGCTTGTGTTCTTTTGTAGGCCACACAGTCCTC
CGGTGCTGCACCATGTAGTGATGTGGTCTGCATGAACATGAGCGTCCTCT
CCTGCTCATGTGTGCCACACACACACACATGTGTATGGCTGGGCAAGACA
TGAAGAAAACCTCTCCTGCTCTTCTCCTAGCTTGTAATGTTTTCTTAGCA
TGCATTAGATGTATACTGTGGCTGCGGTATAATCTTGGCTGTTGGTTGCA
GAGACTCTGCAGACGTGTCTTCAGAGACTGACAGTGCCTTGACCTCAAGC
ATGGTGAGTCAGCTTGTTGAGGCCCCGGAGACAATTTACCTCTCTGGTAA
ATGGGTTTGCGATGTCTTCTTTGTTGACTCCGCTTTATCATTACAGGTCC
GTGGATTACCCATCTACTTCCGGGGACTACTCTGTCTACTTACTACCGTC
CT

NTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCTCCTTTGGTGCACGTG
GAAGCCTTCCACTAGAGATCTTGCTGTGTGGTGCCAGTGAGTTCCACCAG
GTTCAGCGGAGGTAGGGGCTATAGCCACCCGCTGCGTGCTTGACCGCACA
GGACAGTGCTGCCCAAGCCCTAGTGCGCATGTGTCGGGATGAAGAACTAC
TGTAACCTCTAACATTTTTTTGTAAGCCAAGTGACTCATTCGTGACCAGT
GTGGTTATTTGTGCAATAACCTCTATATCTGGGTGGAGGAAGTCTTGGGT
GTGGCCGTGTTGGTCTCAGAGTGCAGACCCTTAGCGAGAGGCTTTCAAAG
GTTGCATTTATGCTGAATTATGTTACTCAAGCACTATTGCAGGGAATCGA
GGATGGGACGGGAATGGGTGGGGAGGTCTATTTTTTCCCATATCCTCCTC
TCTCCCCCTCCGTTTTTCTTTCTTTCTCTTCCTTTTTCCCTCTCCTTCTT
CTTTTTTTACTTTATCTGTCCTTTCTTCTTCTTCTTTTCCTATTTCTCCT
TTTCTTTTTTTATTTCTCTTTAACCTTCTTTTTTTTTCTTATTTTTTTTC
TTCCTACTTTTTTTCTTCCGTTTTCCAGTTATTTTTCTGTCATTTCTTTT
TTATCTCTTATTCACTTTTATTTATTACCCTTTTCTCTCTTTTCTTTTCC
TCTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_d19.b1 MSMg01no421_d19.b1 CHROMAT_FILE:
MSMg01no421_d19.b1 PHD_FILE: MSMg01no421_d19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:20 2005
         (249 letters)



>mm_chr14_48168849_48169497
          Length = 649

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcaaattccaggccagcctggcatgcacgagcccctgtcttacagactgacgattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agcaaattccaggccagcctggcatgcacgagcccctgtcttacagactgacgattttat 389

                                                                       
Query: 61  tgtgttttattttgctctgggattcagtatgaggattggatctaggcctcccaattttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgttttattttgctctgggattcagtatgaggattggatctaggcctcccaattttta 329

                                                                       
Query: 121 tcattgcattttcctaagtaggtaatttgggtgaaactttaaaagtcttgcaactttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcattgcattttcctaagtaggtaatttgggtgaaactttaaaagtcttgcaactttttc 269

                                                                       
Query: 181 ataaggttgacatttttataccaagaaaacatgtgcctatctagttgtgtagcaaatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ataaggttgacatttttataccaagaaaacatgtgcctatctagttgtgtagcaaatagt 209

                   
Query: 241 ggcttgtg 248
           ||||||||
Sbjct: 208 ggcttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no421_d19.g1 MSMg01no421_d19.g1 CHROMAT_FILE:
MSMg01no421_d19.g1 PHD_FILE: MSMg01no421_d19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:21 2005
         (397 letters)



>mm_chr14_47993836_47994632
          Length = 797

 Score =  758 bits (392), Expect = 0.0
 Identities = 395/396 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctcctttggtgcacgtggaagccttccactagagatcttgctgtgtggtgccagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggctcctttggtgcacgtggaagccttccactagagatcttgctgtgtggtgccagtga 260

                                                                       
Query: 61  gttccaccaggttcagcggaggtaggggctatagccacccgctgcgtgcttgaccgcaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttccaccaggttcagcggaggtaggggctatagccacccgctgcgtgcttgaccgcaca 320

                                                                       
Query: 121 ggacagtgctgcccaagccctagtgcgcatgtgtcgggatgaagaactactgtaacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacagtgctgcccaagccctagtgcgcatgtgtcgggatgaagaactactgtaacctct 380

                                                                       
Query: 181 aacatttttttgtaagccaagtgactcattcgtgaccagtgtggttatttgtgcaataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatttttttgtaagccaagtgactcattcgtgaccagtgtggttatttgtgcaataac 440

                                                                       
Query: 241 ctctatatctgggtggaggaagtcttgggtgtggccgtgttggtctcagagtgcagaccc 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctagatctgggtggaggaagtcttgggtgtggccgtgttggtctcagagtgcagaccc 500

                                                                       
Query: 301 ttagcgagaggctttcaaaggttgcatttatgctgaattatgttactcaagcactattgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagcgagaggctttcaaaggttgcatttatgctgaattatgttactcaagcactattgc 560

                                               
Query: 361 agggaatcgaggatgggacgggaatgggtggggagg 396
           ||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaatcgaggatgggacgggaatgggtggggagg 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space:   305744
Effective search space used:   305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |