BAC Information

Click to search

BAC

Clone NameMSMg01-421E01
Chromosome14 (Build37)
Map Location 77,116,701 - 77,116,812
singlet/doubletsinglet
Overlap genenone
Upstream geneCog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4, 1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik, Tsc22d1, 2810032E02Rik
Downstream geneLOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755, LOC676171, EG629678
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421E01.T7 (MSMg01no421_e01.b1)MSMg01-421E01.TJ (MSMg01no421_e01.g1)
ACCAG515923AG515924
length761875
length of high quality
(start - end)
269 (74 - 342)115 (73 - 187)
definitionCHROMAT_FILE: MSMg01no421_e01.b1 PHD_FILE: MSMg01no421_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:22 2005CHROMAT_FILE: MSMg01no421_e01.g1 PHD_FILE: MSMg01no421_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATACCACCTTGCCACTTCCCCCTTCAAAAAGGACTTTCCAAACTG
TACTAGCAGGCCAAGTACAGAGCCAGATAAGGAAGCTGGCTGACTAAACA
AGTGTAAAAACATAGTTTTAGCGGTCAAAATGATTAAGCCTGCAGCTACC
AAAACAATATTAGCTGTTCTCAGAGAAATAACCATAACAAGATTAGCAAT
TCTCCTGTCCCCTGCCCCACACTGAATTCCGACAAAGACCACAAACAACC
CTGACCTTGGTGCGAGAATTCCCTTGTTTTTAACAGCTGTGACGNTAATG
TACTATTACCTTGCTAACCAAATCCTAATAACCCACCATGGGGGGCAAGC
AAAAGGGTCAGTTAGTCACTATACAAACCAACCAATGCCTGAAAGGGTCA
CTTGCTACACCAATGAGAACGCTGTTGCTCAAATCTGCCCCTTACAAAGA
TATAAAAAGCGTGCTCTTTCTTTGTTCGTGATCTCTCCTCTGGCCTGCGT
GCTGTGAGGTGTATCCCGAATATGTTGGTATCCGCTGCACTCCGCATCGA
AGGCAATCGGTCTTTGTGAGACTTCAGAGTAAGGGTCTTTTGTTGTACTA
CGGCAGCTCCTCTGTTTCTTTCTTCTGAATTTAACCGCCTATTTACGTTC
CTTTAAATACTCAACGCATATATATGGTACTTTTCCGTTGTTCCTCTCCT
ATTTCTTTCTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGAGATTATTTAAAGACAGAATCAACA
GGATCCTGGTAGTTGATGGATGGGTTGTATGGGTGGAGAAGACTAGAGGT
GTCCCAAGCGTCTGGGTTCTGATTTCCATTCTGCCGACGCCAAAAATGCG
CAACGAAAGCGTTCCCGACCACCCGCGCGGGCCTTTCTCGCATTCCCGGC
GCATCGTTTAGACACGTTACCTCACAGCACTACAGCAAAATATACTGACT
CTGGCCGTGTGCCATGCAGACTATTTTTTTTTTCCACCCCCCCCGCCACG
TCTCCCAACCCTTCTACCTTTTCCCCCCCCCCCCTTCCTCCTTTCGCCCG
TACTCACTCCTCTCCTCCCTCTCCCCCCCCCCTATACTTCTTCCACTCTT
CTCTTCATCCCCGCCCTCGCCTCCTCTCTCTTCCCCCCCCCTCTCCTCCC
CCCCTCCGCCTTACTCCCTCCCCTTCCTCCTCCCCCCGCCCCCTCCCTCC
TCTCTTCCCCTCTCCCTCTCCCCCCCCTCTTCTTCTCCCCCACTACACTC
CCCTCCCCCCTCCTTCTCCCCCCCTCTTCTCCTCGCCCCCCTCCCTTTAC
TCTCCTCCCTCTCCCTTCCCGTCCCGCCTCTTTTCCTTCTTCCCCCCCCC
ACGCTCCGACTCTCTCCCATCTCCATCCCTCCGCCCTCCTTTCCTCTCCT
TTTCTTCCTCCCCTCGTTTCCCCCTCACTTCGTCGTTCCTCTTCTCCCCC
GCTCTTCTTCTTTCTTCACTTTTCTTCCTCCGTCCTTCCCTCGTCCCCCC
ATNTCTACTCTTCTCTCGTCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_e01.g1 MSMg01no421_e01.g1 CHROMAT_FILE:
MSMg01no421_e01.g1 PHD_FILE: MSMg01no421_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:22 2005
         (115 letters)



>mm_chr14_77116501_77117015
          Length = 515

 Score =  178 bits (92), Expect = 9e-50
 Identities = 107/112 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagagattatttaaagacagaatcaacaggatcctggtagttgatggatgggttgtatgg 60
           ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 312 aagagattatttaaagacagaatcaacaggaccctggtagttgatggatgagttgtatgg 253

                                                               
Query: 61  gtggagaagactagaggtgtcccaagcgtctgggttctgatttccattctgc 112
           || |||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 252 gtagagaagactagagacgtcccaagcgtctgggttctgatttccattctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)