BAC Information

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BAC

Clone NameMSMg01-421J14
Chromosome14 (Build37)
Map Location 60,888,911 - 60,889,401
singlet/doubletsinglet
Overlap geneMtmr6
Upstream genePhf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l, Cdadc1, Tmem46, Atp8a2, LOC668162, LOC628768, Nupl1
Downstream gene2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421J14.T7 (MSMg01no421_j14.b1)MSMg01-421J14.TJ (MSMg01no421_j14.g1)
ACCAG516187AG516188
length752766
length of high quality
(start - end)
286 (333 - 618)491 (77 - 567)
definitionCHROMAT_FILE: MSMg01no421_j14.b1 PHD_FILE: MSMg01no421_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:50 2005CHROMAT_FILE: MSMg01no421_j14.g1 PHD_FILE: MSMg01no421_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCCGC
GGAATTCTTTCTCAGTTACATGATGCTATCCCCATTCCACCTCCAGGAAA
TAATAGCTTACATCTACCACCCAGGCCCAGATCCAGGGCTATGAGTTGGC
CCACCCCATTAGATGAACTTCTAGAGCCCATGAAAGGGCCAATCCTAGAA
ATCCAAAGTTGAAGGATCTCCATGACACAGGGCAACAACAGAATATCTGA
GAGAAATCCCGAGAAGGATCCAGAATAACAGAAAGCAGAGGCCTCAAATG
AGACCAATGACTCAATGTAATGAGAATTTATTAGCAAAGATGTGTAGACA
AAAGAATATACTGTGTGACACACTGTGACGCACTACAGCTTCCACAATGA
GATTTTTCTTTTCTTTTGGGGGAGAAAGTTACAAGGGTGGAGGATGGGTA
CAAAGGCACAGGGTGATGAATGGGAATGGGAGCATGATGTGAAATTCACA
AAAAATCGGTAAATACAAAATTCTAAAAACTCTATTACTTGACACTTTCT
AGATGTGGCCATTCAGATTTTTATAATGAGGGGTAAGAGGTTAATTTGTC
TTTCTCTTACTTGAAAATTATACTAAGGTGGCTCTCTCTATGCCTCTGGG
CACGCCTCCCCTCTAGGATAGCAGAGTCGTGGCTGATAACTAAGCTTTTC
TATCTGAAATTTGTGCATGGACACCTATCTTACTGGCATGTTTGGCCGCC
TA
NNNCCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTGGAGGAGACACACCTGCATTTT
ATCTGATGAAGGAACACAAACAGGCCTTTAAGTGCAGTAGTACTGACAGT
ATCAACCCAGAGAAAATTTGGTTGGGCAGGTGGAACCACCGAGGAGTAAG
GAAACAGTGTAGGCGTGGTTGAGAGATGATGGAGCCTGGAGGAAGCACCC
AGAGAGGAAGCCCATGTTGTCTAATAGTAAAACTGGAGTGAGGAGAAAGA
AAGAATCTGAAATGGAGGGAGACTGTCTATTCATTATTGTTGACTTGCAG
ACTGGGCACAGACAGGAGAAAGTGAGTCAGAAAAGCCAATCCTGAGTACA
GTTGATGGAGAGTTAATCACTACTTTAGTCAGAGCCAGGTTACATCAAAC
CCAGGAAATGCAACCATTACAACTAACCAGCAGCTTCTATAGTGTCTCAG
CATATGGACGGAGCGAATGAGAACATCAATCTGAAATTAAACCACGACAT
TTACTTTCTGCCTAAAGTGCTGAAGAATGAGTAGTTTTGGGAAACACATT
CTACCCTTTTATTGAAAATCCTTCTTCCAAAACTTTTTCTTTGCTACAAT
CTTCAAAAAAAAAAAAAAAAAAAATTAAAAGCCCGACCCGGAGCCCTGCA
AGCTGGCTCCTTTTCCTTTTCCCCCCCAAAATTTAAAAGTACCCCGTTTT
TGGAAATAATAAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_j14.g1 MSMg01no421_j14.g1 CHROMAT_FILE:
MSMg01no421_j14.g1 PHD_FILE: MSMg01no421_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:50 2005
         (491 letters)



>mm_chr14_60888711_60889601
          Length = 891

 Score =  849 bits (439), Expect = 0.0
 Identities = 478/491 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaggagacacacctgcattttatctgatgaaggaacacaaacaggcctttaagtgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttggaggagacacacctgcattttatctgatgaaggaacacaaacaggcctttaagtgca 632

                                                                       
Query: 61  gtagtactgacagtatcaacccagagaaaatttggttgggcaggtggaaccaccgaggag 120
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 631 gtagtactgacagtatcaacccagagaaaattcggctgggcaggtggaaccaccgaggag 572

                                                                       
Query: 121 taaggaaacagtgtaggcgtggttgagagatgatggagcctggaggaagcacccagagag 180
           ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 571 taaggaaacagtggaggcgtggttgggagatgatggagcctggaggaagcacgcagagag 512

                                                                       
Query: 181 gaagcccatgttgtctaatagtaaaactggagtgaggagaaagaaagaatctgaaatgga 240
           ||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||| |||||
Sbjct: 511 gaagcccatgttgtctaatagtaaagctggagagagcagagagaaagaatctgacatgga 452

                                                                       
Query: 241 gggagactgtctattcattattgttgacttgcagactgggcacagacaggagaaagtgag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gggagactgtctattcattattgttgacttgcagactgggcacagacaggagaaagtgag 392

                                                                       
Query: 301 tcagaaaagccaatcctgagtacagttgatggagagttaatcactactttagtcagagcc 360
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tccgaaaagccgatcctgagtacagttgatggagagttaatcactactttagtcagagcc 332

                                                                       
Query: 361 aggttacatcaaacccaggaaatgcaaccattacaactaaccagcagcttctatagtgtc 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 331 aggttacatcaaacccaggaaatgcaaccattacacctaaccagcagcttctatagtgtc 272

                                                                       
Query: 421 tcagcatatggacggagcgaatgagaacatcaatctgaaattaaaccacgacatttactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcagcatatggacggagcgaatgagaacatcaatctgaaattaaaccacgacatttactt 212

                      
Query: 481 tctgcctaaag 491
           |||||||||||
Sbjct: 211 tctgcctaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)