BAC Information

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BAC

Clone NameMSMg01-421O01
Chromosome14 (Build37)
Map Location 48,776,147 - 48,986,919
singlet/doubletdoublet
Overlap genePeli2, EG624367
Upstream geneGch1, Wdhd1, Socs4, LOC670795, C130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34, D14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2
Downstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421O01.T7 (MSMg01no421_o01.b1)MSMg01-421O01.TJ (MSMg01no421_o01.g1)
ACCAG516401AG516402
length822792
length of high quality
(start - end)		126 (70 - 195)433 (74 - 506)
definitionCHROMAT_FILE: MSMg01no421_o01.b1 PHD_FILE: MSMg01no421_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:12 2005CHROMAT_FILE: MSMg01no421_o01.g1 PHD_FILE: MSMg01no421_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,986,794 - 48,986,919)(48,776,147 - 48,776,579)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCGGATGTATCACACAAGTATTCTCGGAGGCTTAAGTAACATTTTCCCA
GGGACTTCGGGGATGCAGTGGGAATGAAACATTGCCAACAAGAATCCTGA
CAGGTCTAGTGGCCCAATGCCCATAATCCTGGCCACTCTGAAGGCTGAGG
CAGGAGGACTGCCAAGGTTGACGTCAACTTGCGCTGCAGACGATTCTTTT
TGTTTGCGCTCCCGATGAGAGCTGTCCCAGACAAACAACCCCCGGTGTCC
GGGTCTTTTCTCTTTTCGCCAAACGTCTTTTTTCCGCGTTACCTTATTAA
TTGTGTAAAACCCCGGTGGGGCCCAAAAGGGTCATTCCCGTGTCTTTCCC
TCATTATTTTCATCCGGGGGCTCTGTCTTTTCTCACTCGTCTTTTAAACC
TGGCCTATCTTCTTCTTCTTCATTCTCACTCCCCCGTGGTTCCTCTCTTT
ACTTTTTACCGCCGTACTCTTCCCTCCCTTCTTTCCCAACCTGTAATTTT
AATTATTTATGTTCTCGTATATCTTATTACCTATCTTCCTCTACTCTACC
CCCTTCTTTCACTCTTTCCGTCACACTTTCTTATTCATCATCTTCTTTCT
AGTTTTGCTCTTTCTTAATATTATAACCTTTCTCCTCTCACTACATACTG
CTAACCTCCTCACTTTTTTCTTCTCCTGCTCACCTATTCCGCTTTCATCT
CATTTCTTCTCCTCCGCTAATCTTTTTCTTCTTCCCTTTCTCCCTCCCTT
TCCCCTCTCTTTTCCCTTCCCC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACATAATGTATGTTGATTGTATTCCC
CCTCAACTTCTCCCCTTAACTCACCTTTGATCCACGCACACCTTGCTACC
CCACATCTCGCACGTAGGCTTTGTCTTCTTAAGACAACCAAACAAAACAA
ACACGAAGACCATGGATTCCAGTTTGTGCTGTCCCTCCCCTTGTGAGTGT
GGGACATCCACTAGAATGTAGTTGACCCACCAGGTACCACATTCTTAAAG
AAAACTCTCCATCCCACAGAATTTCTCAGCTGTCCACACCTCTTCAGTGA
GGGCCGGGACCAGGCTCATAAGCCCCTTTGCATTGCATAGTAGAATGTTG
ACTGTCCTTATTACGTGCAGCCAGCCACAGCTGCTGTGAGTTGATAAGTG
CAGTGGTCCTGTCACATCTGGAAGATGCTCTTTTGCTCTGGACTTCCCTG
TCCTCTGGCTCAGTCTTTCTGCCTCCTTCTAGATGGTCAGATGGTCCCGA
GCCTTGTAGACAAGGTCATGATAACATGTGGTCCCGTTGGGAACGAATAT
TCCTCCCCGTAAACGTCGTCTTGCTTTCTGTTCTCATGCGGTCGTTTGGT
GCTCTTTTTTGGCGTGTTGTTCACTTCGAACCTTTCTGACTTTCCCATAT
TATGTCCTCACCTAATTGTAGTACTTCTTATTATATTCATTATCATTTGT
AATTATCTTCTATATCCCTTATTTCATCTTTTTCGTACCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_o01.b1 MSMg01no421_o01.b1 CHROMAT_FILE:
MSMg01no421_o01.b1 PHD_FILE: MSMg01no421_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:12 2005
         (126 letters)



>mm_chr14_48986594_48987119
          Length = 526

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattctcggaggcttaagtaacattttcccagggacttcggggatgcagtgggaatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tattctcggaggcttaagtaacattttcccagggacttcggggatgcagtgggaatgaaa 267

                                                                       
Query: 61  cattgccaacaagaatcctgacaggtctagtggcccaatgcccataatcctggccactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cattgccaacaagaatcctgacaggtctagtggcccaatgcccataatcctggccactct 207

                 
Query: 121 gaaggc 126
           ||||||
Sbjct: 206 gaaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no421_o01.g1 MSMg01no421_o01.g1 CHROMAT_FILE:
MSMg01no421_o01.g1 PHD_FILE: MSMg01no421_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:12 2005
         (433 letters)



>mm_chr14_48775947_48776779
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacataatgtatgttgattgtattccccctcaacttctccccttaactcacctttgatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacataatgtatgttgattgtattccccctcaacttctccccttaactcacctttgatcc 260

                                                                       
Query: 61  acgcacaccttgctaccccacatctcgcacgtaggctttgtcttcttaagacaaccaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgcacaccttgctaccccacatctcgcacgtaggctttgtcttcttaagacaaccaaac 320

                                                                       
Query: 121 aaaacaaacacgaagaccatggattccagtttgtgctgtccctccccttgtgagtgtggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaacaaacacgaagaccatggattccagtttgtgctgtccctccccttgtgagtgtggg 380

                                                                       
Query: 181 acatccactagaatgtagttgacccaccaggtaccacattcttaaagaaaactctccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatccactagaatgtagttgacccaccaggtaccacattcttaaagaaaactctccatc 440

                                                                       
Query: 241 ccacagaatttctcagctgtccacacctcttcagtgagggccgggaccaggctcataagc 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacagaatttcccagctgtccacacctcttcagtgagggccgggaccaggctcataagc 500

                                                                       
Query: 301 ccctttgcattgcatagtagaatgttgactgtccttattacgtgcagccagccacagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctttgcattgcatagtagaatgttgactgtccttattacgtgcagccagccacagctg 560

                                                                       
Query: 361 ctgtgagttgataagtgcagtggtcctgtcacatctggaagatgctcttttgctctggac 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ctgtgagttgataagtgcagtggtcctgtcacatctggaagatgctcttttgctctggtc 620

                        
Query: 421 ttccctgtcctct 433
           |||||||||||||
Sbjct: 621 ttccctgtcctct 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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