BAC Information

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BAC

Clone NameMSMg01-423E23
Chromosome14 (Build37)
Map Location 45,804,765 - 45,805,128
singlet/doubletsinglet
Overlap gene5730420B22Rik
Upstream geneEG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2, LOC100041591
Downstream geneLOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685, LOC625377, LOC218963
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423E23.T7 (MSMg01no423_e23.b1)MSMg01-423E23.TJ (MSMg01no423_e23.g1)
ACCAG517496AG517497
length779769
length of high quality
(start - end)
472 (63 - 534)501 (58 - 558)
definitionCHROMAT_FILE: MSMg01no423_e23.b1 PHD_FILE: MSMg01no423_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:58 2005CHROMAT_FILE: MSMg01no423_e23.g1 PHD_FILE: MSMg01no423_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATATTCAGAAAATCCGCGGAATTCTCAACTGATT
CCACTCAAATGGCCAAGAAGCACCTAAAAAAATGTTCAACATCCTCAGTC
ATCAGGGAAATACAAATTAAAACGACCCTGAGATTCCACCTCACATCAGT
CAGAATGGCTATGTTCAAAAATTCAGGTGACAGCAGATGGTGGCAAGGAT
GTAGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTTGTA
CAACCACTCTGGAAATCAGTTTGGCGGTGCCTTAGAAAATTGGACATAGT
ACTTATTGTTGTCTTAGCTATACCACCCCTGGGCATATACCCAGCAGATT
CTACAACATATAATAATGACACATGTTCCACTATGTTTACAGAAGTCATA
TTTATGGAAACAACCCAGCTATCCCTCAACAGAGGAATGGCTACAGAAAA
TGTGGTACATTTTCACAATGGAATACTACTCTGGGGAGACAACAGGGTAA
CTGCAGAACTTGATTCATTTGAGGCAAACTTTGCTGTCCTGCCATCCCCA
GAGATGTTTGCACTCTCCAGTTTGGCACCACACTTTTTCCTTCTCCCTTG
TCTTCCGGAGTTGCAGGTAACAATGACAGCATGACTCTAGACTTTTTTAC
TGTGGTTTCTTCTCCAAAGGCGGTTCTTCACTGCTGTTTCACTATTAATC
CCTCCCCAAACATTTTATTTTTTTATTTCTATACGGGGGGGGGTGGGCGG
GGTTCTTTATTTTTCTTTTTCACCAACCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTCTTGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACA
GCGAAGGCCCGCGCCATCTTATAATGGCGATTGCTCGCTGCACACACGGC
TCTCCTCAGAGATTACTGGCGGCACACATACGATTGCTCGCAGCACGTAC
CGGCTCTCCACAAAGGTGTAGATCTGGGTTGCTCCTGCCCCATCATTAGC
TAGCATCCTTTCTCCATTTGGCTTCCCATTTGTAAGAGTGGTCAGTGATG
GCTGGGTGTGCTGGTAAATGCTTGTAAGCATTTGAGACGGAGGCAAGAGG
ATCTCTTCAGGTTTGAGGCCAGCCTGGGCTAGCTAGCAAGATCCTTTTTT
CCTAGTCCCCCAAATAGTGGGCTACAATATCAGAAAGTCCAATCATTCCT
GTCAGGAGTCCTGGATTTGAATCTTAGCTGTAGCAGCAACTAGCAAAAAT
GATCTGGAGCCACTGGACTTCCTGTGTCGAGCTACAGTGTTTCAGTAACA
TTGTTGAGGATGTATGTGGAGCATGCAAAATACCCAGCCCAGCGAATACT
GCTTAGCATACACTCTTATAAACAAAACAAGAGGCTACCCTGGGGACTAT
AGATCAAGTTCTTCTACTTCATAAATCTTTAATACATAGCCAAATATTTA
AGTTAATATAAAGTTGGAACAGCACTTTCAGAGTGACTATCCAAGCCCAA
TATTTCCCGGGACATAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_e23.g1 MSMg01no423_e23.g1 CHROMAT_FILE:
MSMg01no423_e23.g1 PHD_FILE: MSMg01no423_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:58 2005
         (501 letters)



>mm_chr14_45804228_45805128
          Length = 901

 Score =  681 bits (352), Expect = 0.0
 Identities = 359/364 (98%), Gaps = 5/364 (1%)
 Strand = Plus / Minus

                                                                       
Query: 143 ccggctctccacaaaggtgtagatctgggttgctcctgccccatcattagctagcatcct 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ccggctctccacaaaggtgtagatctgggttgctcctgccccatcattagctagcatcct 842

                                                                       
Query: 203 ttctccatttggcttcccatttgtaagagtggtcagtgatggctgggtgtgctggtaaat 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ttctccatttggcttcccatttgtaagagtggtcagtgatggctgggtgtgctggtaaat 782

                                                                       
Query: 263 gct-----tgtaagcatttgagacggaggcaagaggatctcttcaggtttgaggccagcc 317
           |||     ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gcttgtaatgtaagcatttgagacggaggcaagaggatctcttcaggtttgaggccagcc 722

                                                                       
Query: 318 tgggctagctagcaagatccttttttcctagtcccccaaatagtgggctacaatatcaga 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgggctagctagcaagatccttttttcctagtcccccaaatagtgggctacaatatcaga 662

                                                                       
Query: 378 aagtccaatcattcctgtcaggagtcctggatttgaatcttagctgtagcagcaactagc 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aagtccaatcattcctgtcaggagtcctggatttgaatcttagctgtagcagcaactagc 602

                                                                       
Query: 438 aaaaatgatctggagccactggacttcctgtgtcgagctacagtgtttcagtaacattgt 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaaatgatctggagccactggacttcctgtgtcgagctacagtgtttcagtaacattgt 542

               
Query: 498 tgag 501
           ||||
Sbjct: 541 tgag 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)