BAC Information

Click to search

BAC

Clone NameMSMg01-423P23
Chromosome14 (Build37)
Map Location 56,209,346 - 56,209,757
singlet/doubletsinglet
Overlap genePsme2
Upstream gene4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik
Downstream geneRnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423P23.T7 (MSMg01no423_p23.b1)MSMg01-423P23.TJ (MSMg01no423_p23.g1)
ACCAG518021AG518022
length776770
length of high quality
(start - end)		411 (66 - 476)447 (62 - 508)
definitionCHROMAT_FILE: MSMg01no423_p23.b1 PHD_FILE: MSMg01no423_p23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:49 2005CHROMAT_FILE: MSMg01no423_p23.g1 PHD_FILE: MSMg01no423_p23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCACTATATTCCGAGAATCCGCGGAATTCAGAGACTT
TCCCCCTGGAAAAGATTTGTCTGAAGACATCCACCTGCACAGACAGAAGT
AGCCGGATGCTGGTTAGGGGTTTAGTTTGTATAGAATAAGGGCCCACTCC
CAACCTAGGTGCCTTCCAACTCTAGCCCAAACCTGTCCCACAAAGCTAGT
TTCCCCCTGGAGGAGCCTGCTCAGTGCACAGATTGGCTCGAGGACACGGC
ACTGGCAATCCCTGAGCAGAAGTGAAAGAAAGCCCTAAAGAAAGAGAGGC
CGGTGGAGTTCTGTTCGCAAGGCCTTGGTGCCCAGGAGCACCGAGCTTTA
TCTCCGTTAGGACTTCTCACTCCTTCCTGGCTTCGGTTCCCATTTACCTG
TTTTCGGGCTTCTCCACTCAAGCGGACCCCACAAGGCTTGGCCATGCTTC
CCCCCACTTGGCAGCTCTCGAGCCTGGGCTAGTAGCCCCAGCTTTCGCTT
TCACTCTCCAGGCCCAGATCCACCCCCCTCAGCCACGCCCCCTCCCTTTT
TTCTCCCCCTCCTGTGCGGCCACCCACCGTGAGTAGTAATCCCTTCATCC
ATTCCAGCTTTGTTGTTCTATGAAATGTCGGTGTTGCCTCCCACCATCAC
GGCTTGTCCTCTTTTGCAATCTCCGCCCCTCTTGTTTCTCCCTATCCCTC
TTTATTAGCGTGCTTCCCCTCCAATGTGTCTATTTTTTTCTTTCTTTCGC
CTTTTGTTTTCCCCCTTTTTTCTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTCCTGAGGAATACAGAATGGCTGAGAAGCACCTGAAA
AAATGCTCAGCATCCTTAATCATCAGAAAAATGCAAAGCAAAACAACCCT
GAGATTCCATTTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTG
ACAGCAGATGCTGGTGAGGATGTGAAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTTTGGCGGTT
CCTCAGAAAATTGTACATAGTACTACCGGAGGATCCCGCAATACCTCTCC
TGGGCATATATCCAGAAGATGTCACAACCAGTAAGAAGGACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACA
CAATGGAGTACTACTCAGCTATTACAAAGAATGAATTTATGATATTCCTA
GGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAGGGACATCATCA
CAAAAGAACTCCAATGAATATGACTCCCTGATAAGGGGATATTAACCCCA
CAACTTTATTATGCCTGAAAAAATAAATTCCTTTTGGCTAAAACTTTGGT
TTCGGAAAGCAAAGAAATAACCAAGTGGGGGAATCCTTTTTCCCCTCTCT
ATCAACTGTAAATACTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_p23.b1 MSMg01no423_p23.b1 CHROMAT_FILE:
MSMg01no423_p23.b1 PHD_FILE: MSMg01no423_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:49 2005
         (411 letters)



>mm_chr14_56209146_56209957
          Length = 812

 Score =  762 bits (394), Expect = 0.0
 Identities = 408/414 (98%), Gaps = 5/414 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtctgaagacatccacctgcacagacagaagtagccggatgctggttaggggtttag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tttgtctgaagacatccacctgcacagacagaagtagccggatgctggttaggg-tttag 259

                                                                       
Query: 61  tttgtatagaataagggcccactcccaacctaggtgccttccaactctagcccaaacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tttgtatagaataagggcccactcccaacctaggtgccttccaactctagcccaaacctg 319

                                                                       
Query: 121 tcccacaaagctagtttccccctggaggagcctgctcagtgcacagattggctcgaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcccacaaagctagtttccccctggaggagcctgctcagtgcacagattggctcgaggac 379

                                                                       
Query: 181 acggcactggcaatccctgagcagaagtgaaagaaagccctaaagaaagagaggccggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acggcactggcaatccctgagcagaagtgaaagaaagccctaaagaaagagaggccggtg 439

                                                                       
Query: 241 gagttctgttcgcaaggcc---ttggtgcccaggagcaccgagctttatctccgttagga 297
           |||||| | ||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gagttc-gctcgcaaggccccattggtgcccaggagcaccgagctttatctccgttagga 498

                                                                       
Query: 298 cttctcactccttcctggcttcggttcccatttacctgttttcgggcttctccactcaag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttctcactccttcctggcttcggttcccatttacctgttttcgggcttctccactcaag 558

                                                                 
Query: 358 cggaccccacaaggcttggccatgcttccccccacttggcagctctcgagcctg 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cggaccccacaaggcttggccatgcttccccccacttggcagctctcgagcctg 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space:   322806
Effective search space used:   322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |