BAC Information

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BAC

Clone NameMSMg01-424C08
Chromosome14 (Build37)
Map Location 102,317,917 - 102,318,479
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, LOC100043795
Downstream geneLOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424C08.T7 (MSMg01no424_c08.b1)MSMg01-424C08.TJ (MSMg01no424_c08.g1)
ACCAG518135AG518136
length728732
length of high quality
(start - end)
563 (69 - 631)516 (82 - 597)
definitionCHROMAT_FILE: MSMg01no424_c08.b1 PHD_FILE: MSMg01no424_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:01 2005CHROMAT_FILE: MSMg01no424_c08.g1 PHD_FILE: MSMg01no424_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCAAGTTCCCGGATGAGGTACCATGACGCACGCCTTGTTCTTAT
TCTTCTCTATACCTTGTTGGAGAACCTAGCGGAGGACACCACACCCCATT
TTCCTAGACACTCTCACCTCTGTAGCTCTTTGGAAATATATTGAATTCTA
GTATGTTAGAAATTTGCCTTACTATTTTAACTTTTCTCTTGTATAGCATC
AAGCAGTTATTCCTTGGAATTTTGGAGTAGTCTTTCTGCTCCAACTTCTT
TGGTTTTGTTTGTTTGTTTGTTTGCTTTTTGTTTTTTTTCCAGGCAGGGT
TTCTCTGTGTAGCCCTGACTGTCCTGGAACTCACTCTGTAGACGAGGCTG
GCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTT
TTTTTTTTTTATTTAAGGCGCTGTGACTATCTTTTTGGCTGCTTACCATT
AATCTCCTCTCTGTATGAAATGATAGAGAGACAGATGGTGACAGTGACGT
GTTTGCTTTCTTTTATGGGCTGCCTAGGAGCTGATGGTCCTAAATTCCAA
CAGCATTTCTCTGACCTCCCGGGAGCCTGTGGCCGCCACCTGGGAAGCCA
CGTGGAGTGAAGGGTCCAAGTCTCTGGACAGCGAAGGCACCCGAGCGGGA
GAGGAGGACTGGGGACAGCTGGAATACG
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTGGCCTCAAACT
CATTGTAGCAATCTGTTCTAATCATCTAGTTCCTTCTCATTCCCTGGCTC
ATTCTTTTTATTCCCCAATTTTTTATTAGGTATTTACTTTATTTACATTT
CAAATGTTATCCCAAAAGTCCCCTATACCCCTCCCCCGCTCCCCTACCCA
CCCACTCCCACTTCTTGGCCCTGGCATTCTCCTGTACTGGGGCATAAAAG
TTTGCAAGACCAAGGGGCCTCTCTTTTTTATGATGGCTGACTAGGCCATC
TTCTGCTACATATGCAGCAGAGACACGAGCTCTGGGGGTACTGATTAATT
CATATTGTTGTTCTGCCTATAGTGCTGCAGACCCCTTCAGCTCCTTGGGT
ACTCTCCTCCATTGGGGGCTCTGTGTTCCATCCAATAGCTGACTGTGAGC
ATCCACTTCTGTGTTTGCCAGGCACTGGCATAGTCTCACAAGAGACAGCT
ATATCAGGGTTCTTTCAGCAAAATCTTGCTGGTGTATGCAATAGTGTCTG
CTTTTGGTGGCTGATTATGGGATGAACCCTGTTTGGGGCAGTCTCTGTAT
AGTCCTCCTTTCTTCTCATCTTCAACTTTGTCTCTGTTACTCCTTCCATG
GGCGTTCTTGTCCCACTTTTATTATACGTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_c08.b1 MSMg01no424_c08.b1 CHROMAT_FILE:
MSMg01no424_c08.b1 PHD_FILE: MSMg01no424_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:01 2005
         (563 letters)



>mm_chr14_102317717_102318679
          Length = 963

 Score =  866 bits (448), Expect = 0.0
 Identities = 533/580 (91%), Gaps = 34/580 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggtaccatgacgcacgccttgttcttattcttctctataccttgttggagaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgaggtaccatgacgcacgccttgttcttattcttctctataccttgttggagaaccta 260

                                                                       
Query: 61  gcggaggacaccacaccccattttcctagacactctcacctctgtagctctttggaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||                
Sbjct: 261 gcggaggacaccacaccccattttcctagacactctcacctctg---------------- 304

                                                                       
Query: 121 tattgaattctagtatgttagaaatttgccttactattttaacttttctcttgtatagca 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 305 tattgaattctagtatgttagaaatttgccttgctattttaacttttctcttgtatagca 364

                                                                       
Query: 181 tcaagcagttattccttggaattttggagtagtctttctgctccaact----------tc 230
            |||||||||||||||||||||||||||||||||||||||||||||||          ||
Sbjct: 365 ccaagcagttattccttggaattttggagtagtctttctgctccaacttagacctcagtc 424

                                                                       
Query: 231 tttg-gttttgtttgt----ttgtttgtttgctttttgttttttttccaggcagggtttc 285
           ||||  ||||||||||    || ||| |||| ||||||||||||||| ||||||||||||
Sbjct: 425 tttgttttttgtttgttttcttattt-tttgttttttgttttttttcgaggcagggtttc 483

                                                                       
Query: 286 tctgtgtagccctgactgtcctggaactcactctgtagacgaggctggcctcgaactcag 345
           |||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 484 tctgtgtagccctggctgtcctggaactcactctgtagaccaggctggccttgaactcag 543

                                                                       
Query: 346 aaatctgcctgcctctgcctcccaagtgctggga--tttttttttttttatttaaggcgc 403
           ||||| ||||||||||||||||||||||||||||  ||||||||||||| |||||||| |
Sbjct: 544 aaatccgcctgcctctgcctcccaagtgctgggatttttttttttttttttttaaggcac 603

                                                                       
Query: 404 tgtgactatctttttggctgcttaccattaatctcctctctgtatgaaatgatagagaga 463
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 604 tgtgactatctttttggctgcttaccattaatctcctctctgtacgaaatgatagagaga 663

                                                                       
Query: 464 cagatggtgacagtgacgtgtttgctttcttttatgggctgcctaggagctgatggtcct 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cagatggtgacagtgacgtgtttgctttcttttatgggctgcctaggagctgatggtcct 723

                                                   
Query: 524 aaattccaacagcatttctctgacctcccgggagcctgtg 563
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaattccaacagcatttctctgacctcccgggagcctgtg 763


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)