BAC Information

Click to search

BAC

Clone NameMSMg01-424G16
Chromosome14 (Build37)
Map Location 74,436,467 - 74,437,035
singlet/doubletsinglet
Overlap genenone
Upstream geneCysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734, EG629578
Downstream geneLOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519, LOC100043169, 5031414D18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424G16.T7 (MSMg01no424_g16.b1)MSMg01-424G16.TJ (MSMg01no424_g16.g1)
ACCAG518341AG518342
length740753
length of high quality
(start - end)
568 (67 - 634)350 (77 - 426)
definitionCHROMAT_FILE: MSMg01no424_g16.b1 PHD_FILE: MSMg01no424_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:22 2005CHROMAT_FILE: MSMg01no424_g16.g1 PHD_FILE: MSMg01no424_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAATGTAACCAGGAGGTGGCAGAGGCTTCTTGTGAACTGGCTTTG
GAGAATGCAGTCATCCACAGCTGCAGATATTTTTTGATATCTTGTTATTT
CCCATAGCCTTGCTCTAGCGTTTTGAAAGCAAATACCCAATGGAAGTCTC
TGCATATAGAGATAATTATTACATAATTATTCATTGGTAAGGAATGCACA
TAATAATTTCTACATAATGTATCCTAATTTCAGTGAAATTCTAGCTTTAT
GCCCTTATTTGGAAATTTTATTCAAGCAGACCAACAAAACTTCTCTGGTA
AGAATCTGTATTCCTATATCTTAGACATCCTACAGTGAGAATCGCATAAA
CCAATGGCTATGTATAGAACCTGTTAGCGATCATGACAGACATACTATTT
CTGTGAGATGCAATCCTGGGTGGTCCCAATTCTTGTATGGGTAGAGACTA
TCTTAACACTTTTAGCCAATGTACACAGAANAATATTTTCATTTTTCTTT
TATTGAGTTCTTGTTTCTAATACTCATCAGACAGAATTAAATACAAAAAC
ATCCTCACTGCTTCTATGAATAANAATCACTGTCTTCTTTGCTAGAAAAG
TGTCTAGTGTTTGTTGAGATATGAATACCAGGAATATTTACAGGAACTAC
CTCTAGATCTTCAGATACAGTGCCTGCTGATTCTTAAAGT
TCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTATCGCGTATGGCTCCTGTGGAT
AAAGTCAATCCTTTCAGGAAAAGCATCACAACAGGAAAAGGAAGCTATCT
AGTAATATTTCACTTCCGCACAGGGAGTAGAAGAGCCCAGGGAGAAGAGA
AGGAGAAATTTTAAAAAAAGAGTAAGTCTGGAAAGGCCCAAAATCTATTC
CCAGTAATACACTTCCTCCACTGAGGCTCCAGTTTCTGAAGTTTTCATAA
CTTTCCAGTCAACTGGGACCAAGTGTTCAAATACCTGAACCTATGAGTTA
AGTTTTCATTCATATTACCATAGAAAACTAACAGAATCTAAAAGATTTGA
GCATTTTATTCCTGGTTACACGACCAGTAACAGTGAGGCTGCATTTGGAC
AGTGATACCTCTGATTCCAGAGCCTGCCCACCTGCCCCTAAAAAATATTT
TAGTGCACATGATGGAAAACTGTTTAGCTCAATTTAGCTTGTTTGCTTTA
TACTTAAAGAACAGGAGAGTCAAACATTATCACTGAACTATGTGTGACTG
CTCTACTATACAACGATTTCTCCTAGAGATAGAACGGTCTCAATATTCTG
GCTTGATATTCATAGCAGGGAAGTCCTTGGATCTCCTGGTCTTGGGCTCC
GGGCGAGGTTGTTATGAGGACCACGCAGCCACCCCGTAAAGGTGTGCCTT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_g16.b1 MSMg01no424_g16.b1 CHROMAT_FILE:
MSMg01no424_g16.b1 PHD_FILE: MSMg01no424_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:22 2005
         (568 letters)



>mm_chr14_74436267_74437235
          Length = 969

 Score = 1035 bits (535), Expect = 0.0
 Identities = 560/569 (98%), Gaps = 1/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaggtggcagaggcttcttgtgaactggctttggagaatgcagtcatccacagctgcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaggtggcagaggcttcttgtgaactggctttggagaatgcagtcatccacagctgcag 260

                                                                       
Query: 61  atattttttgatatcttgttatttcccatagccttgctctagcgttttgaaagcaaatac 120
           |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 atattttttgatatcttgctgtttcccatagccttgctctagggttttgaaagcaaatac 320

                                                                       
Query: 121 ccaatggaagtctctgcatatagagataattattacataattattcattggtaaggaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatggaagtctctgcatatagagataattattacataattattcattggtaaggaatg 380

                                                                       
Query: 181 cacataataatttctacataatgtatcctaatttcagtgaaattctagctttatgccctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacataataatttctacataatgtatcctaatttcagtgaaattctagctttatgccctt 440

                                                                       
Query: 241 atttggaaattttattcaagcagaccaacaaaacttctctggtaagaatctgtattccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttggaaattttattcaagcagaccaacaaaacttctctggtaagaatctgtattccta 500

                                                                       
Query: 301 tatcttagacatcctacagtgagaatcgcataaaccaatggctatgtatagaacctgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcttagacatcctacagtgagaatcgcataaaccaatggctatgtatagaacctgtta 560

                                                                       
Query: 361 gcgatcatgacagacatactatttctgtgagatgcaatcctgggtggtcccaattcttgt 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaatcatgacagacatactatttctgtgagatgcaatcctgggtggtcccaattcttgt 620

                                                                       
Query: 421 atgggtagagactatcttaacacttttagccaatgtacacagaanaa-tattttcatttt 479
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 621 atgggtagagactatcttaacacttttagccaatgtacacagaaaaaatattttcatttt 680

                                                                       
Query: 480 tcttttattgagttcttgtttctaatactcatcagacagaattaaatacaaaaacatcct 539
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tcttttattgagttcttgtttctaatactcatcagacagaattaaatacagaaacatcct 740

                                        
Query: 540 cactgcttctatgaataanaatcactgtc 568
            ||||||||||||||||| ||||||||||
Sbjct: 741 tactgcttctatgaataaaaatcactgtc 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 969
Length adjustment: 10
Effective length of query: 558
Effective length of database: 959
Effective search space:   535122
Effective search space used:   535122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)