BAC Information

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BAC

Clone NameMSMg01-424I02
Chromosome14 (Build37)
Map Location 103,861,445 - 103,861,608
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797
Downstream geneScel, LOC100043448, Slain1, Ednrb, Pou4f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424I02.T7 (MSMg01no424_i02.b1)MSMg01-424I02.TJ (MSMg01no424_i02.g1)
ACCAG518409AG518410
length735737
length of high quality
(start - end)
169 (49 - 217)384 (83 - 466)
definitionCHROMAT_FILE: MSMg01no424_i02.b1 PHD_FILE: MSMg01no424_i02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:28 2005CHROMAT_FILE: MSMg01no424_i02.g1 PHD_FILE: MSMg01no424_i02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCTTTTCTTGGTCATACAGACAACACACCTGACAAGTCTCCT
CTCCCCTGGTGTGGCCACTCCACATTTCATCTCTGCAATGCTTCTTAAAC
TTGACTTTTAAGTGTTGCAGTTCCTTAACCCATGGCCTTTTAAACTTCTC
TTCCTTCAATATTCTCGNTCNCCATTGGGNTCTATTTTTTTACATCTATT
TGTATGTCAACTCCCCAAAATCAATGGTCCTCTAAATTTTGTAATCCAGA
ATGAGATCTGGCTATTTAAATGTTTGNGTGCCGGGTTTGGAAGCATGCCC
TAAGTGGCACACAAGAATGGGGGGCCAAAAAATCAGGGTTCCAAATTTTT
TCTCCAGGGCCCGGCCCAAAACCTTTTTTCCAGGGGGGGGCCAAATTCCC
CCCAAAAAAGAGAAAAAATTTTCCTCCCTCAAAACAGGGAATTGCCGGAA
AAGTACCCCCAAAAATTCCCTATTAAAATTTTTCTTTTTCCCCAATTTTT
TTTCCCCCCCTTTAAAAAACCTTCCTTCTTTTTTTTTTTTTTAAAAAAAC
TCTCCCCGTCTTTTTGGTCTTCTCCCCCTCAAAAAAAAATATATATATCC
CCCCCCCACCAAAAAGGGGCCGCCCTTATATTATATTTTCTCCCACCTTA
AAAAGAAAAAAATAAAAACACTCCCCCCCAATGAT
TCTCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGA
AAGGCTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGA
AATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGG
CTAAGATAAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATATGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCATAATAATTGGACATAGTACTACCG
GAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAAC
CGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTAATTTATAA
TAGCCAGAAGCTGGAAAGAACCCAAATGCCCCTCAACAGAGGAATGGATG
CTCAATACGCGGCACTTTTACACCATGGAGTACTACTCAGCTATTATTAA
GAACGAATTTATGAAATTCCTAGGCTAATGGTTGGACCTGGAGGGTATCT
TCCTGAGTGAGGTAACCCAACCATAACAGAACTTATATGAAATGTTCTCA
CTGATCAGTGCATATTATTCCTACAAACTTATTATAGCGAGATTATATGT
TCTATACGCATAATCCATGTAATTTGATTATAATGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_i02.b1 MSMg01no424_i02.b1 CHROMAT_FILE:
MSMg01no424_i02.b1 PHD_FILE: MSMg01no424_i02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:28 2005
         (169 letters)



>mm_chr14_103861241_103861809
          Length = 569

 Score =  310 bits (160), Expect = 4e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccttttcttggtcatacagacaacacacctgacaagtctcctctcccctggtgt 64
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 368 gaattcccttttcttggtcatacagacaccacacctgacaagtctcctctcccctggtgt 309

                                                                       
Query: 65  ggccactccacatttcatctctgcaatgcttcttaaacttgacttttaagtgttgcagtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggccactccacatttcatctctgcaatgcttcttaaacttgacttttaagtgttgcagtt 249

                                                       
Query: 125 ccttaacccatggccttttaaacttctcttccttcaatattctc 168
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccttaacccatggccttttaaacttctcttccttcaatattctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)