BAC Information

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BAC

Clone NameMSMg01-425K21
Chromosome14 (Build37)
Map Location 101,605,910 - 101,606,402
singlet/doubletsinglet
Overlap geneLOC100043421
Upstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik
Downstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425K21.T7 (MSMg01no425_k21.b1)MSMg01-425K21.TJ (MSMg01no425_k21.g1)
ACCAG519304AG519305
length764772
length of high quality
(start - end)
493 (63 - 555)410 (63 - 472)
definitionCHROMAT_FILE: MSMg01no425_k21.b1 PHD_FILE: MSMg01no425_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:58 2005CHROMAT_FILE: MSMg01no425_k21.g1 PHD_FILE: MSMg01no425_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCCTTGTCC
ATTCCTCCCAGTAAATGCTGCAGTGGTACTGTGGGTTGCCTATTCTGTAT
AGATGGGCAACTAGTTAATAAAATGTGACCTTTGCCACTCAGCAAAATGC
CTAAGTTTAGCCTTTGCCACTTATTGCTCCCCAGAAACTGTTCCTTGGCT
GTGATTTTACCTTCATTGTAAGATGACCCTTCAAGGATGCCTCATACCAC
ACAGAAGAGGGTAGAAAGATCACGTCTTTCTCTAGTTTTCTTGATACTGT
CCAGTTGGCTCAGTGGCTTAATATGGACAAAGACCCTGGGATGAAGCAGG
AGCCTCTCACTGGTACAATGTCCATCTACAGAGAAGGCAGGTTAGCCTAG
CCTCTACTTGAAAAGAAATGAAGGAATGGCCTGGAGAACAATGGATCAGT
GTCACCTGTGTTTTCTGTATATAAATGGACCAGCCAAGAAAAAAGTCAGG
CTGAAATGCCCTAAGTAGAACTAGGCACGGGGGCTTGAAGCAGTTACAGC
AGCAAATGCAAGGGAGGGGTTGCTTTAATTTTTCAAAGAAATAAATGAAG
TACACTGTCCTCAATTGTCTCCCTTGGATGGCCTCATCCACCACACCCCA
CCCCACATAAATTTTCTCTCACCATCCCAAGCAAGAAATCCTGTGGTAGT
GACAACCTTTTTGGGGTCAGGTGAGGATTCTGCCCCCAAAGGAAAGGTCC
TTTTCCCCAACCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGTTTAGCTCTGTTTCCCATTTTTTAATAGGGTTAT
TTGGTTTTCTGGAGTCTAACTTATTGAGTTCTTTATATATATTGGATATT
AGCCCCCTATTGGATTTAGGATTGGTAAAAGTCTTTTCTCAATCAGTTGG
TTGCTTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAGAAGCTTTGCA
ATTTTATGAGGTCCCATTTGTTGATTCTTGATTTTACAGCACAAGCCATT
GCTGTTCTGTTCAGGAAATTTCCTCCTGTGCCCATATCTTCAAGGCTCCA
AGATACAATTTGCAAAACACATGAACCTCAAGAAGAAGGAAAACCAGTGT
GGATACTTTTTTGAAGGGGGAACAAAATACGCATGGAAGGAGTTACCAAG
TTCAGAGCAGAGACTGAAGGAAAGACCATTTAGAGACCACCTCATGTGGG
GATCCATCCCATAAACAACTACCAAACCCGAACACTATTGTGGATGGCAA
CAAGATCTTGCTGAAAGAAACTGATAAACTGTGTTCTTGAAGGTCTGCCA
GGTCTGACAAATACAAAATGGAAGGTCCCTTCCTCCCTTGGAGGGAACAC
CGGGTTCCACTTAGGGGCTTAGAAAAAAACCACCGGGCTGAAGGGTTTGC
GTCCCCTCGGGGAACAAATTTGGATTATCTTTTCCCCAGATCCCTTGGGT
TAATCCTTTTTTAAAAAAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_k21.b1 MSMg01no425_k21.b1 CHROMAT_FILE:
MSMg01no425_k21.b1 PHD_FILE: MSMg01no425_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:58 2005
         (493 letters)



>mm_chr14_101605710_101606602
          Length = 893

 Score =  930 bits (481), Expect = 0.0
 Identities = 490/493 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgctgcagtggtactgtgggttgcctattctgtatagatgggcaactagttaataaa 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgctgcagtagtactgtgggttgcctattctgtatagatgggcaactagttaataaa 260

                                                                       
Query: 61  atgtgacctttgccactcagcaaaatgcctaagtttagcctttgccacttattgctcccc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 atgtgacctttgccactcagcaaaatgcctaagtctagcctttgccacttattgctcccc 320

                                                                       
Query: 121 agaaactgttccttggctgtgattttaccttcattgtaagatgacccttcaaggatgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaactgttccttggctgtgattttaccttcattgtaagatgacccttcaaggatgcct 380

                                                                       
Query: 181 cataccacacagaagagggtagaaagatcacgtctttctctagttttcttgatactgtcc 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 cataccacacagaagagggtagaaagatcacgtccttctctagttttcttgatactgtcc 440

                                                                       
Query: 241 agttggctcagtggcttaatatggacaaagaccctgggatgaagcaggagcctctcactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttggctcagtggcttaatatggacaaagaccctgggatgaagcaggagcctctcactg 500

                                                                       
Query: 301 gtacaatgtccatctacagagaaggcaggttagcctagcctctacttgaaaagaaatgaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacaatgtccatctacagagaaggcaggttagcctagcctctacttgaaaagaaatgaa 560

                                                                       
Query: 361 ggaatggcctggagaacaatggatcagtgtcacctgtgttttctgtatataaatggacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaatggcctggagaacaatggatcagtgtcacctgtgttttctgtatataaatggacca 620

                                                                       
Query: 421 gccaagaaaaaagtcaggctgaaatgccctaagtagaactaggcacgggggcttgaagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gccaagaaaaaagtcaggctgaaatgccctaagtagaactaggcacgggggcttgaagca 680

                        
Query: 481 gttacagcagcaa 493
           |||||||||||||
Sbjct: 681 gttacagcagcaa 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)