BAC Information

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BAC

Clone NameMSMg01-425L14
Chromosome14 (Build37)
Map Location 54,459,024 - 54,459,580
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneA630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425L14.T7 (MSMg01no425_l14.b1)MSMg01-425L14.TJ (MSMg01no425_l14.g1)
ACCAG519338AG519339
length750832
length of high quality
(start - end)		542 (39 - 580)37 (120 - 156)
definitionCHROMAT_FILE: MSMg01no425_l14.b1 PHD_FILE: MSMg01no425_l14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:01 2005CHROMAT_FILE: MSMg01no425_l14.g1 PHD_FILE: MSMg01no425_l14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TATACATACCCATCTTTACACACACACACACACACACACACACACACAGC
AGTAAAGTCTATACAGATAAAACTTTAGAAATACACTTCTAATAACTCAT
CTCCAACTCAAACAAATTTCCTAAATGAAGATGGTTGTATCTTCTGTAGT
CCGTGGTTCTACATAAAGAGTGTCAAAATACAAAATAAACAAGACTGAGG
CCCTGGCCTTCAGCAGTTATTTTTTTTCTGTAGGAACACAACTGTCAACA
TGATCTCAGTAAACTTCATGCTGAGTGAAGAGCTTAGTCTTCCCAATGCT
TTATAAGTTTACCTTGGGAATCTTTTTCACCTCCAAAAAAGGAGTCTCCT
GACCCTGTGTGGTAGTGTAGCTCCAACTCCTATAATGAACACTCAGCAAG
AATGAAAGTCCTAGCTCATTCTAATCGTCCTGTGATGCTTTAACATCATT
CTAAGAATATATTCTGCACTATAAAGATCTCCCTACTACTGCCACATTCC
TAAACCAATGTAATTCCTTACTGAACTATAAATATTTGCCTATATACTCA
TAAGTAAGATTGGTCTCACCCATCATCAAAGAAGTGTCTTTTGCCAGCAG
ACAGAGACTATTTCAGAAATCCCCACCTGGTTAAAATACAGTGATCCACT
GAACATGGGGTATAAACCCCCAACGAGAAAAAATATATTTTTTTAAGAAA


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGTTCCGGACCTCCCATATTAAGTTTTTTGTAAGTCGACAAGTCGTAGAG
GGAGATGGGAGCAGCTCCTTTATTATTATTATTATTATTATTATTATTAT
TATTATTCTTATGAGTGAGACCACCCCGCCGGCGCCCCCCGCCCCCCGCC
GCCCGGGCGGGCTCGCCCCCCCCCCCCCCCGGCCGGGCCGCCGCCGGCCG
GCGCGCCGCCCGGGCCCCGGCGCCCCGCCCCCCCCGGCCCCGGTGCGCCG
CCCGCCCCGCCCCTCTCGCCCCCCTCCCCCCCGGGCCNCCCCGGCCGCCC
CGCCCCGGCCCCCCCCGGGCCGCGCCCGGCCGCCTCGGCGCCCGCCGCCC
CCCCGCGCGGGCCCCCCCCCCCCCCCCCCCCGCCCCCCGCGCGCCGCCCC
TCGCGCCCCCGCCCCCGCCCCCCCTGGTCGCCCCCCCCGCCCCCCCCCCC
CCGCCCCCGCGCCCCCGCCGCCCGCCCCCCCCGCCCCCCNCGCGCGGCCC
CGCCCCCCCCCCCTCCCGCCCCCCCGCCCGCCCCCGTCCCCCCCGCCCCC
CCCCCGCCCTCCCCCCCCCCCCCCCGCCGCCGCCCCCCCCCCCCCCCGCC
GGCCTCGGCGCCCCCCGCCCCCCCGCCCCCTCCCCCCCCCGCGGCTCCGC
CCCCCCCCGCCCCCCGGCCGCCGCCCCCCCCTGCCCCCCCGCCCCCCCCC
GCCGCCCCCGCCCCGCGGCCCCCCCCGCCGGGGCCCCCCGGCGCGCGCTC
GCGCCCGCCCGTCCGCCCCCCGCCCCCCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_l14.b1 MSMg01no425_l14.b1 CHROMAT_FILE:
MSMg01no425_l14.b1 PHD_FILE: MSMg01no425_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:01 2005
         (542 letters)



>mm_chr14_54458838_54459780
          Length = 943

 Score =  965 bits (499), Expect = 0.0
 Identities = 534/557 (95%), Gaps = 19/557 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattatacatacccatctttacacacacacacacacacacacacacacaca---- 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
Sbjct: 187 gaattcattatacatactcatctttacacacacacacacacacacacacacacacacaca 246

                                                                       
Query: 61  --------------gcagtaaagtctatacagataaaactttagaaatacacttctaata 106
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacacacacacacagcagtaaagtctatacagataaaactttagaaatacacttctaata 306

                                                                       
Query: 107 actcatctccaactcaaacaaatttcctaaatgaagatggttgtatcttctgtagtccgt 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actcatctccaactcaaacaaatttcctaaatgaagatggttgtatcttctgtagtccgt 366

                                                                       
Query: 167 ggttctacataaagagtgtcaaaatacaaaataaacaagactgaggccctggccttcagc 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggttctacataaagagtgtcaaaatacaaaataaacaagactgaggccctggccttcagc 426

                                                                       
Query: 227 agttatttttttt-ctgtaggaacacaactgtcaacatgatctcagtaaacttcatgctg 285
           || |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 427 agctatttttttttctgtaggaacacaactgtcaacatgatctcagtaagcttcatgctg 486

                                                                       
Query: 286 agtgaagagcttagtcttcccaatgctttataagtttaccttgggaatctttttcacctc 345
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgaagagcttagtcttcccgatgctttataagtttaccttgggaatctttttcacctc 546

                                                                       
Query: 346 caaaaaaggagtctcctgaccctgtgtggtagtgtagctccaactcctataatgaacact 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caaaaaaggagtctcctgaccctgtgtggtagtgtagctccaactcctataatgaacact 606

                                                                       
Query: 406 cagcaagaatgaaagtcctagctcattctaatcgtcctgtgatgctttaacatcattcta 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cagcaagaatgaaagtcctagctcattctaatcgtcctgtgatgctttaacatcattcta 666

                                                                       
Query: 466 agaatatattctgcactataaagatctccctactactgccacattcctaaaccaatgtaa 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agaatatattctgcactataaagatctccctactactgccacattcctaaaccaatgtaa 726

                            
Query: 526 ttccttactgaactata 542
           |||||||||||||||||
Sbjct: 727 ttccttactgaactata 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space:   496356
Effective search space used:   496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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