BAC Information

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BAC

Clone NameMSMg01-425L17
Chromosome14 (Build37)
Map Location 94,920,731 - 95,008,297
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425L17.T7 (MSMg01no425_l17.b1)MSMg01-425L17.TJ (MSMg01no425_l17.g1)
ACCAG519344AG519345
length758771
length of high quality
(start - end)		594 (32 - 625)503 (63 - 565)
definitionCHROMAT_FILE: MSMg01no425_l17.b1 PHD_FILE: MSMg01no425_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:01 2005CHROMAT_FILE: MSMg01no425_l17.g1 PHD_FILE: MSMg01no425_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,920,731 - 94,921,318)(95,007,795 - 95,008,297)
sequence
XXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCAAAGCCA
CAATCTAAATAAAAAGAGATTATTAGCTACCTTGCAGTAGGCAAACAGTA
AAGACTCAAGTGATCAATACTTGACAAGAGACATGCCACAAACTTCATGT
ATAGGTCAGACCCACAGGCTTTCTTTTAAATAAATCGACTGACTCTTGGA
CAAGGCACATAAAATGTCACTTTTTATCTCTCAGTTGATATTTTCTTTCA
AAAGGAGGGGGGCTATCTATTCACCTCTCTGAGAGATTTGATCGAGAAGA
TAGTCACTCCTGATATAAGGTTTAAAGGAGAAAACTGCAATCAAGTGGAA
ATTTTTGTCAGTACCTTAATCTCTGATTTGTAGAAGGTTTTGCTTTGGGA
TATTTGGTGTGTCTGAGGATTGCCACCAAAGAGCCCTTCTGTTCTTTAAT
GGCAGCCCTAAATCTTAACAAACGTGAGCATGAAAACTATTGTGCAGCAC
TTGTGAGGCATATATCAAAGTTATATTTTTTAAAGCTTGGAAAGGCAGTT
GAATCATGCATGGTCTTTATGGAGCTCTGATCAGCCTGATAAAGGCAGTT
CAGCTTCAATAAGCGCTTTTTAAGTGAATGTTTTGGGAAGTGAATAGGAA
ATTCAAAGCTCAGACTGTTGCCAAACTGCTCCCTCAGTGCTTTGATCACT
TGCTTTCTGACATTTTGTTGAAAATGTCTTGGTTTCATTATAATGTTGGC
ATCGAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXAGATGAGTTTATGTGCACAAGTTTATACACTTGTGTGT
ATGTGCATATATATATTCTTAATTTTTTTTTTTTGTTATTTTCCAAGTAC
CTCAGGTCTGGAAAAAAAAAACAATTGACCAGTGGAGACAATTCAATCCA
CCAAGGTAGAAATAATTATAAAAGCTTGATGTATAAAATTTATGTAAGCT
AATTATGAAGATACATGAAAATATTTTAATAGAATAAATTGGTTAGTGCA
CTTAAAATATAGAAAAGTACTTTCTAGTGCACTGAGGATAATTGTTTGCT
AAAAACTCCACATTTATAAAAATGAATTGTTGACTTTTTAAACATATTAA
AAATTCTATTAGTTTTTGCTTCCCATTGTTTTTGATGTGTTACAATACAG
GAGAAAATGTAAATACAAGCTAGTTATAGGAACTTAACAAAGTCTCACGG
AGTATTTTTTTTTAAATCCTGGAGTAGTTTATATTATTCACTATTATTTC
AATGATTAAGGGCACACACTAGTACTGTGGTCTTTACTAAGGTTTAAAAC
AAAACATGCTCTCCCATGCAGTGCACCCTAAAAATATCTGTACAGACATT
TCAATAGAAAAATAAAATTGTGCCCATCTAAAATTATTATAAATTTGGGA
ACAAAAATCTTAATAAGCATTTTCCCCCGGAAGGAAAACTGGAGAAAAAA
AAACTACAATTGGGTTAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_l17.b1 MSMg01no425_l17.b1 CHROMAT_FILE:
MSMg01no425_l17.b1 PHD_FILE: MSMg01no425_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:01 2005
         (594 letters)



>mm_chr14_94920525_94921518
          Length = 994

 Score = 1129 bits (584), Expect = 0.0
 Identities = 587/588 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcaaagccacaatctaaataaaaagagattattagctaccttgcagtaggcaaaca 66
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaaagccacaaactaaataaaaagagattattagctaccttgcagtaggcaaaca 266

                                                                       
Query: 67  gtaaagactcaagtgatcaatacttgacaagagacatgccacaaacttcatgtataggtc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtaaagactcaagtgatcaatacttgacaagagacatgccacaaacttcatgtataggtc 326

                                                                       
Query: 127 agacccacaggctttcttttaaataaatcgactgactcttggacaaggcacataaaatgt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agacccacaggctttcttttaaataaatcgactgactcttggacaaggcacataaaatgt 386

                                                                       
Query: 187 cactttttatctctcagttgatattttctttcaaaaggaggggggctatctattcacctc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cactttttatctctcagttgatattttctttcaaaaggaggggggctatctattcacctc 446

                                                                       
Query: 247 tctgagagatttgatcgagaagatagtcactcctgatataaggtttaaaggagaaaactg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctgagagatttgatcgagaagatagtcactcctgatataaggtttaaaggagaaaactg 506

                                                                       
Query: 307 caatcaagtggaaatttttgtcagtaccttaatctctgatttgtagaaggttttgctttg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 caatcaagtggaaatttttgtcagtaccttaatctctgatttgtagaaggttttgctttg 566

                                                                       
Query: 367 ggatatttggtgtgtctgaggattgccaccaaagagcccttctgttctttaatggcagcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggatatttggtgtgtctgaggattgccaccaaagagcccttctgttctttaatggcagcc 626

                                                                       
Query: 427 ctaaatcttaacaaacgtgagcatgaaaactattgtgcagcacttgtgaggcatatatca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctaaatcttaacaaacgtgagcatgaaaactattgtgcagcacttgtgaggcatatatca 686

                                                                       
Query: 487 aagttatattttttaaagcttggaaaggcagttgaatcatgcatggtctttatggagctc 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aagttatattttttaaagcttggaaaggcagttgaatcatgcatggtctttatggagctc 746

                                                           
Query: 547 tgatcagcctgataaaggcagttcagcttcaataagcgctttttaagt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgatcagcctgataaaggcagttcagcttcaataagcgctttttaagt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_l17.g1 MSMg01no425_l17.g1 CHROMAT_FILE:
MSMg01no425_l17.g1 PHD_FILE: MSMg01no425_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:02 2005
         (503 letters)



>mm_chr14_95007515_95008417
          Length = 903

 Score =  973 bits (503), Expect = 0.0
 Identities = 503/503 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatgagtttatgtgcacaagtttatacacttgtgtgtatgtgcatatatatattcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agatgagtttatgtgcacaagtttatacacttgtgtgtatgtgcatatatatattcttaa 724

                                                                       
Query: 61  ttttttttttttgttattttccaagtacctcaggtctggaaaaaaaaaacaattgaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ttttttttttttgttattttccaagtacctcaggtctggaaaaaaaaaacaattgaccag 664

                                                                       
Query: 121 tggagacaattcaatccaccaaggtagaaataattataaaagcttgatgtataaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tggagacaattcaatccaccaaggtagaaataattataaaagcttgatgtataaaattta 604

                                                                       
Query: 181 tgtaagctaattatgaagatacatgaaaatattttaatagaataaattggttagtgcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgtaagctaattatgaagatacatgaaaatattttaatagaataaattggttagtgcact 544

                                                                       
Query: 241 taaaatatagaaaagtactttctagtgcactgaggataattgtttgctaaaaactccaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 taaaatatagaaaagtactttctagtgcactgaggataattgtttgctaaaaactccaca 484

                                                                       
Query: 301 tttataaaaatgaattgttgactttttaaacatattaaaaattctattagtttttgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttataaaaatgaattgttgactttttaaacatattaaaaattctattagtttttgcttc 424

                                                                       
Query: 361 ccattgtttttgatgtgttacaatacaggagaaaatgtaaatacaagctagttataggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ccattgtttttgatgtgttacaatacaggagaaaatgtaaatacaagctagttataggaa 364

                                                                       
Query: 421 cttaacaaagtctcacggagtatttttttttaaatcctggagtagtttatattattcact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cttaacaaagtctcacggagtatttttttttaaatcctggagtagtttatattattcact 304

                                  
Query: 481 attatttcaatgattaagggcac 503
           |||||||||||||||||||||||
Sbjct: 303 attatttcaatgattaagggcac 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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