BAC Information

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BAC

Clone NameMSMg01-425O01
Chromosome14 (Build37)
Map Location 82,662,219 - 82,662,687
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425O01.T7 (MSMg01no425_o01.b1)MSMg01-425O01.TJ (MSMg01no425_o01.g1)
ACCAG519455AG519456
length733741
length of high quality
(start - end)
579 (40 - 618)469 (70 - 538)
definitionCHROMAT_FILE: MSMg01no425_o01.b1 PHD_FILE: MSMg01no425_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:13 2005CHROMAT_FILE: MSMg01no425_o01.g1 PHD_FILE: MSMg01no425_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TAAACTTCCTTCTTTAAATGATCAAGAACTGGAGATTAGGTAACTCATTG
ACCAAGACTAAAACTAAATATGTCTTATTGTTTTTAAAAACAATTAACAA
TAAAATAACTTCTAGTAGTATTTTACTATACTCATAGATTGGGGCCTTAT
TAGGTGATCATTAAGGAAAATTCCTCCTATAGCAGATGGCAACAAATACA
GAGATTCACAAACAGATATTATACAGAGAGAAAGAGACTTTGAAGCAATC
CATCCTAAATGTATTGTTTTCATCAAATTCATTCCCTCAGAACTTAATAG
ACTCCTTAGAAAAGAGGGCAAATAGTGTAAGAACCAGGAATACTATAGGA
CACCATGAACAAAAAAAACGTAAGAGAAATCCCTATGAACTCAAGGAGAT
TAAAACAGGATGCACAGGGCCTAAATGTATCTGTAGCATGTCTTTTGATT
ATATATTACTACTATAATTTTATGGGATTACTGATTGTCTTGACAGGTCG
ATTTCTAATCCTCGTGCCTTCTCTTTGGACTTATTCTCTGTGTTGAGTAT
TCTTGTCCAACTTAGATATGGTAGTTTTTGTTTTATCATATATATTATAT
TAATTATATTATACCATATCATATCATACTATGGAGCATTATATTATACT
TGAGAATATCCTATTTTTCATAACAGCTGTGTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTTGTCCTCAAGTGAACATGGTTATGGT
CTCTGCAGTGGACTTTATTTCGCTTCTCCAAAAGCTCAGAGCACATAAAA
AGATTTGAGCTGTAATCACGGCAAGCAGGGCTCTGAAGGAATTGGTATGC
AAAGAAATAAAAGGAGTGATAAAATCATATAACAGGTTGTGAAGTCAGAC
CATGAAACCCTCTGGGATAAGCATGCCCTCAGCCCCAGATATGTGTGGGA
TTAAAAATAATGCCTACAATTTGTCAGAATTCTTCTGCAGAGACACTTCT
TCATGAATTCGCTCATTTCTAAGGTTGGTGTTCCATAAGGCCTCAACAGT
GTGCTTCTAACATAGAAGCATTGCCACAGTAGCATATATGATATCCTTAG
ATACTGAGGTATATTTTTGTCTCCAAATATAATACTAGATACTTAAAGAC
TGTAGAACACTAGAAAATATTACAAAACACAAAAAATATTGTCTGTGAGT
TCAAATTTGACATTATGAAACTAAAGGCAGAGGAATGGATTTTAATTCCA
CAGAGTATGAAATTTTCAATCATATGATTTGTGAGTTCATATTGAAACTT
ACCCTTTTAAAATTGCATGGTGTATGGGTGTGAAAAAAAACCCGCGATGT
GCCTAGGAAAAAAAGGTAAAGGCCTAATAATCGTCCTCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_o01.g1 MSMg01no425_o01.g1 CHROMAT_FILE:
MSMg01no425_o01.g1 PHD_FILE: MSMg01no425_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:13 2005
         (469 letters)



>mm_chr14_82662019_82662887
          Length = 869

 Score =  876 bits (453), Expect = 0.0
 Identities = 465/469 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttttgtcctcaagtgaacatggttatggtctctgcagtggactttatttcgcttctcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 669 tgttttgtcctcaagtgaacatggttatggtctctgcagtggactttatttcacttctcc 610

                                                                       
Query: 61  aaaagctcagagcacataaaaagatttgagctgtaatcacggcaagcagggctctgaagg 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaatgctcagagcacataaaaagatttgagctgtaatcacggcaagcagggctctgaagg 550

                                                                       
Query: 121 aattggtatgcaaagaaataaaaggagtgataaaatcatataacaggttgtgaagtcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aattggtatgcaaagaaataaaaggagtgataaaatcatataacaggttgtgaagtcaga 490

                                                                       
Query: 181 ccatgaaaccctctgggataagcatgccctcagccccagatatgtgtgggattaaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ccatgaaaccctctgggataagcatgccctcagccccagatatgtgtgggattaaaaata 430

                                                                       
Query: 241 atgcctacaatttgtcagaattcttctgcagagacacttcttcatgaattcgctcatttc 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 429 atgcctacaatttgtcagaattcttctgcagagatacttcttcatgaattcgctcatttc 370

                                                                       
Query: 301 taaggttggtgttccataaggcctcaacagtgtgcttctaacatagaagcattgccacag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taaggttggtgttccataaggcctcaacagtgtgcttctaacatagaagcattgccacag 310

                                                                       
Query: 361 tagcatatatgatatccttagatactgaggtatatttttgtctccaaatataatactaga 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tagcatatacgatatccttagatactgaggtatatttttgtctccaaatataatactaga 250

                                                            
Query: 421 tacttaaagactgtagaacactagaaaatattacaaaacacaaaaaata 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tacttaaagactgtagaacactagaaaatattacaaaacacaaaaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)